G16422


Basic Information

Item Value
gene id G16422
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 33325086 ~ 33328341 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU20405
GCATtttgtaagaaaatgtttttttttattttgtattattcattgtaAATAAACAGCTATCACAATTTATTAAAGCACACTgcttcagagagaaaaaaaaactcacagaTTTTACAAAGAAATGAGGGATGCGCTGCAGGCAGGAGAGAGGATGAGAGACAGATGGAGTGCCGTTTGTACACAACAGATCCCAGGGAAGACTTGGGGGGCTGTTAGCTGCCCAAAATTCAGCATCACAATCAAGGCCAAAGGCACAGTCTCTTGCTCCTGAAGGTTGACGAGGTCACTGAAAATCTGAGATACACTCCAGAGTCAATCCTGTCTCGCTCGCTCACTTTAATGAGGTACTTCTACGTTCCTCCCTGCCAAATAGTTTGCTCATTAATTCTAGCCCTGGTGTGAGTAATGGGACTCCAGTTAATATAGCCGAAATCTGCAATACAAATGGGGAGTGGATTTGGAATTTGCAGTTGCTTGTCATCTTTTGCACAGATATGGCAGTTTGGCTTAGCATAAGAGTCAGGAGATAAATGCCACTGATCAAGGGTTTATTTGCCAGTAAGCCATTTCAACTTGAAATCCTACAGTATTCCACTTACAGGTCCACTGATTGCAGAATTATACATTCCAGAATGGACTGGTTGTGTTTGTACTACTCCTATCAAAGAAGTAGTGTGGTATAGGGTTGCTTTGGGAGCTTACCGAAATGAATGGTCATTTTATTTGGACAGCTCTGTGAAATCAAAACAGCTTAACCACATCTCTCATCAgcacttctctctctcaatatacatacatacatacatatatataatacacacacacacacattatatatgtgtgtgtttttttgcaagGGTCACCCCTTAAGTTTCAGCCTGGCAAGTGACAGGTCTGGCGGGGCATCTTCCGTCACTAGCGGCTGGCACTCAGAGCTGCAAAAAATGGATTTTAGGCGCTTTTCTAGACACAATATAAGAGTTAAGTCTATACATGACAAAGGGTtatatggaaaaacaaatcaaattgaaaacaggaagaaaatgaCTGGCTGAATATTGCTATCAAGATCTTAAGTAGGATATaagatgcattatatattttttccactacAAACATGCTAAAAAGGGTAACCTTTCATATTGAGCACAAGAAATGGGAGAAGTAAAGACACATAGAAAAGAAGAGTCTCACGGGCATAGCACAGGCAAGGCTCTGAGACGGGATCAGTTTCCTTCTGGACTGTGGAAATGcccagacccccccaccccacccctctctGGTTATTGTGGCAGGCTTCATTAAATACAAAGGGGATTCCCAGCACTACCGAGATGAAGTTATGCCGTGTCTAAGTTTCTGGTGTTGAGGGACTCAGTCCAGGCTAAAAGGTAAAATTCACATAAAAGAGGAGAGACTTGGATTTTTGAGTCATACATGGAACTAGTGggcagaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcacattaGCCTAGCACCCTCTGATCCCACTCCACTGCCCCAGTGACCCAGACAACAACCGATTACTCTCCTGTTTCACCAATAACTGCATACGACCAACACAATCACGTACTAAGTTAAACAACCTTatatagaaaagaaaatatcttcCACTGTCGTAGTTAATTGTCATtacttttcataatttaaaacatattttcttctcCTGTATAAGCTACTTCCAAAcctgaattatattttaacagcCACTCCCATATAGGCCCTGTGTTCAGTTCCAACTTTCCAAGTACAGTTGTGTCATGTGAGTTTTCTATTATGTTAACTAGGGAtttgcaacaaaaaaaactcctaCAGGACATGATTTAAAATCTTCAGTGCACAACTGAAATGCTCCCACTTCAATTACAGACCAATAAGCAGATGCAGAAACACAGGAGGCAGAAGAACAATGACAGCTGAAAATGAAGAACCCTAgataagggaaaaaataataaaaagaggtTTCTATTCAATCCAGGCCTCTGAAGAGTTGTATAGCACAGCAACACATGAATCTGCTCTGCTAGTGTACTGCACCAACAGCTTCCTGCACAGAGTCATTAAGATACAAAAGGAATCTGAAGAGGCACCcttggatttaattaaaatacctaGGACTTCAGCAAGAACCAATCTGTTGTCTGGGATTCATTACCACTGTAAGGATCAACACTTAAAAAGCCACCCCCTCCGAGGGTGTCCTTTTGTCATCGTCTCCGATAGACAACACTACAGTTGCATTCCTTCATTATCTTGTCAAATCAGAAAGCCACACAGATTTCCTAACCAGGGTCACTCCTCTTATTGCAAGCATgtcatctttttgtttgttgaaattGGTTGTGGATGACTTACTGTGTAAAAACAATCTGTGGGCGCAACCAAAAACCCACAAAACGGATTTTCACTGCTTTTAAATGGACCTTGCTCTTAAGTGTACACCAGCAGTACAGTCTCGGCCTCTGAAACCTTCAATACAAATCCACTTAACCGAGTGATCTGCACGGACTGGGCCAAGTGGACTCATGAGAGAAAAGGAAGTTCGTCACTGGAGTGCTGGCAGGCTATACCAACGACATGTGGCAAATCGGACCTTGAACTGTAGAGCAGCTGTGACCATCAGTTTGATCCACAATGTATCAGATTTGGCTCCAGCTGGTGACAGACACCAGTGCAGCTATTGAAGTGTACTGTCCTTCAGCTTTAGTTGACCAGAGAACTTACACAGGAGTCTCAAAGgacagaaccccccccccacccctggctGAACACTTTGAGAAAAGGTACGGGCAGCCTGTCAAACCATCTGACCCATTTAATTCatgcagacaaaaacacaacaaactaaACCTGTTAAGATGCCATACTTGAGGAAGGATGACAGTGGCACAGACTGGGAGAGTTGCAACGCAGCGGTGGATACATGAGAAAAGCAGTCTGCGCGCCTGTGTTCAGACCTACATTTCGTCATAGTTGAGCATAACAGTCCCAAAGGTGTACAAATGTTGTAGTTAACACACCCGTCATTTGAAACAGCCCAGACTGCCTTCATGCGTTACAGCTGCTATCCCAGTTGCAAATAAACAATTCTAGTGGCCTAAAGCCCTACGATGTGACATAACGTGCGTTTTCATTCGTTGCCACGTTATGAGTAACTGTGTAAAGCAGAGGAGGGATTCTGTCCCTTTATTCCACCATCTGACGTCAAAGTCTCTTCCTGGCctctc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU20405 True 3256 lncRNA 0.43 1 33325086 33328341

Neighbor

gene id symbol gene type direction distance location
AMCG00016884 ccdc47,LOC107674171,LOC107658463,LOC107729550,LOC107721963 coding downstream 6504 33307741 ~ 33318582 (-)
AMCG00016879 NA coding downstream 129830 33191702 ~ 33195256 (-)
AMCG00016877 pus3 coding downstream 153153 33168630 ~ 33171933 (-)
AMCG00016878 NA coding downstream 164127 33155283 ~ 33160959 (-)
AMCG00016876 dcakd,LOC107667188 coding downstream 176657 33141438 ~ 33148429 (-)
AMCG00016888 NA coding upstream 5121 33333462 ~ 33348062 (-)
AMCG00016887 kcnh6a,LOC106601567,LOC105012970,LOC108427397,LOC106527280 coding upstream 53543 33381884 ~ 33390755 (-)
AMCG00016893 map3k3,LOC102777599 coding upstream 111211 33439552 ~ 33473811 (-)
AMCG00016894 NA coding upstream 145669 33474010 ~ 33479455 (-)
AMCG00016895 NA coding upstream 185286 33513627 ~ 33520074 (-)
G16378 NA non-coding downstream 32837 33292031 ~ 33292249 (-)
G16377 NA non-coding downstream 40859 33284014 ~ 33284227 (-)
G16375 NA non-coding downstream 68704 33255653 ~ 33256382 (-)
G16325 NA non-coding downstream 340622 32984254 ~ 32984464 (-)
G16293 NA non-coding downstream 463489 32859241 ~ 32861597 (-)
G16502 NA non-coding upstream 299759 33628100 ~ 33628919 (-)
G16505 NA non-coding upstream 305786 33634127 ~ 33634339 (-)
G16509 NA non-coding upstream 312857 33641198 ~ 33641979 (-)
G16510 NA non-coding upstream 314637 33642978 ~ 33643661 (-)
G16511 NA non-coding upstream 315868 33644209 ~ 33648440 (-)
G16356 fzd2,LOC107583044,LOC107658461,LOC107729561,LOC106607305,LOC106601035 other downstream 146203 33176076 ~ 33178883 (-)
AMCG00016859 NA other downstream 817767 32497507 ~ 32507319 (-)
G16247 NA other downstream 901648 32423058 ~ 32423438 (-)
AMCG00016847 NA other downstream 1057118 32261549 ~ 32267968 (-)
AMCG00016815 NA other downstream 1936818 31380547 ~ 31388268 (-)
AMCG00016889 LOC107570748,LOC106906011 other upstream 63448 33391789 ~ 33434651 (-)
AMCG00016891 limd2,LOC107674139,LOC107658411 other upstream 160384 33488725 ~ 33513579 (-)
G16563 NA other upstream 778349 34106690 ~ 34107941 (-)
AMCG00016938 NA other upstream 2067651 35395992 ~ 35399030 (-)
G17032 NA other upstream 4429816 37758157 ~ 37758471 (-)

Expression


Co-expression Network