G16502


Basic Information

Item Value
gene id G16502
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 33628100 ~ 33628919 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU20499
CCGGCCCAAACTGTGCCCACCGTCCACTCACTCTCCGGTGGCGTCGGCGtagcgcagatgtgcgcagctccaccaataggatcgctgggattctgcagatctgtgcaaatcTGCGCCCCACCAACGCGACCTCTGTCCCCAGTGAGTGGCCTGCTGTGCGATAGCGGCATATTTACCTGGTTTCCCGTCCCTGTGCCCGGGCTGCTGCGGTTTGTTGTGGAGCTGGAAGGGAACCGTAGCCCTCAGAGGCTGTAATCCCGAACTGCCGCCCCGGACGACCCCCACACCGCTTCGGCACGACATAGCGAGTAGCCACCGCTGCGCAGGAGCAGACTGGAAAACCACCTTGGATAACTTAAAGCCGAGTAATAtggctgtttaaataaaaattataatgatgatgatgataataataataaaaagtaacttAAAAGCTTAGAAGGCTTTAACAAGGCCAACACAGCAGAGTTATAACTCTAATTGATCTCTACATCTATATATAGTTGGAGTGAATCTGCACCGCGGTGGTAAAACAGCTGCgtttcccacacacacacacaaagtattttcttttgtgaagATAACGATCTTTTCGAAGTGGATTCCCGGCCCGGTTCTCAGTTTTCAAACTCAAAACACGTCGGCCACTGTACACCCAGCTCGGCCACTTTCCCAGAAGAAGTAGGAGTCGACTGAAGCGCTCGCCATTATGTGGGAGCGCTCGGCTCGGTTCCGCTCGCCTCCTGTTGATGCCCGACCTTCTTCTTGACAAACTGACAACAGCGACATGCTCCTGTTCCCGTTTAATTGTAGTGGGCGG

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU20499 True 820 lncRNA 0.52 1 33628100 33628919

Neighbor

gene id symbol gene type direction distance location
AMCG00016904 LOC107583088 coding downstream 31858 33582724 ~ 33596242 (-)
AMCG00016892 ddx42 coding downstream 52804 33554101 ~ 33575296 (-)
AMCG00016895 NA coding downstream 108026 33513627 ~ 33520074 (-)
AMCG00016894 NA coding downstream 148645 33474010 ~ 33479455 (-)
AMCG00016893 map3k3,LOC102777599 coding downstream 154289 33439552 ~ 33473811 (-)
AMCG00016907 nxph3,LOC105012985,LOC105898539,LOC107092790,LOC106601594 coding upstream 248184 33877103 ~ 33880678 (-)
AMCG00016908 NA coding upstream 371678 34000597 ~ 34008800 (-)
AMCG00016911 LOC105028465,LOC108426558,LOC107655803,LOC107557242 coding upstream 585980 34214899 ~ 34263010 (-)
AMCG00016931 NA coding upstream 1462534 35091453 ~ 35096502 (-)
AMCG00016936 NA coding upstream 1606673 35235592 ~ 35245651 (-)
G16422 NA non-coding downstream 299759 33325086 ~ 33328341 (-)
G16378 NA non-coding downstream 335851 33292031 ~ 33292249 (-)
G16377 NA non-coding downstream 343873 33284014 ~ 33284227 (-)
G16375 NA non-coding downstream 371718 33255653 ~ 33256382 (-)
G16325 NA non-coding downstream 643636 32984254 ~ 32984464 (-)
G16505 NA non-coding upstream 5208 33634127 ~ 33634339 (-)
G16509 NA non-coding upstream 12279 33641198 ~ 33641979 (-)
G16510 NA non-coding upstream 14059 33642978 ~ 33643661 (-)
G16511 NA non-coding upstream 15290 33644209 ~ 33648440 (-)
G16519 NA non-coding upstream 30714 33659633 ~ 33662283 (-)
AMCG00016891 limd2,LOC107674139,LOC107658411 other downstream 114521 33488725 ~ 33513579 (-)
AMCG00016889 LOC107570748,LOC106906011 other downstream 193449 33391789 ~ 33434651 (-)
G16356 fzd2,LOC107583044,LOC107658461,LOC107729561,LOC106607305,LOC106601035 other downstream 449217 33176076 ~ 33178883 (-)
AMCG00016859 NA other downstream 1120781 32497507 ~ 32507319 (-)
G16247 NA other downstream 1204662 32423058 ~ 32423438 (-)
G16563 NA other upstream 477771 34106690 ~ 34107941 (-)
AMCG00016938 NA other upstream 1767073 35395992 ~ 35399030 (-)
G17032 NA other upstream 4129238 37758157 ~ 37758471 (-)
AMCG00016959 NA other upstream 4246331 37875250 ~ 38058939 (-)
G17421 NA other upstream 7587732 41216651 ~ 41217231 (-)

Expression


Co-expression Network