G16509


Basic Information

Item Value
gene id G16509
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 33641198 ~ 33641979 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU20506
NNATGCCAATTTCCTCCTGACAAGACAAACAAGACTTTCAGGGTGAGCTCCTTAAAGCTCTCCTAACATTGCATATGAAAAAGAAAGGTCTACCGGTGTCCAGATCAGTGGCCAAGTCTCCCCCAgggaagggggagagggaggagcagGGCGAGGGGGCTGGAGAAAGGAGCGCAGGGTCCAGGGGGGCCGGAGAGGGGTCGCTCTGGGAGCTGCTGCTGCATCGCTGGGGAGGAATGGGGGCTCGGTGCCCATCGGGAACATCCAGGACCTGACAAGGAAATCAGCATTAGCACACTGCATTCAGCgtgacacacaaagacacacgaGCTGCAAGAGACTACCCCTTTATACATGTCTTAAGATTtcgaaaaacaaaaatctacaaTATAACCTCAATCTTGCACCCACATTACTTCTGTGTTGTTATCACTGCTTTCGTTTTACTGCAACCATTCCTGTGCCTCCCCCTCCATTTAGGGCTTACCTAGGACTTAACTGCATTATGTCTGCACTCGTTAGGCCCATGTACTATGATGTCggcttaatgtattttgtaccgactatattactgcactttgtaatgctttgaaatatttaaactgcaagttgccctggataagggtatctgcaaataaataaatatgcttaattataatacataaataaataaatctcttctACCTGTGCCTTTTCTTGTCAGGGAACACTGACTCAAAAAAACCAAACACTTTCATGTTTACACctgcttttctcttttaaagGGGAAAGTTATTGTTCGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU20506 True 782 lncRNA 0.45 1 33641198 33641979

Neighbor

gene id symbol gene type direction distance location
AMCG00016904 LOC107583088 coding downstream 44956 33582724 ~ 33596242 (-)
AMCG00016892 ddx42 coding downstream 65902 33554101 ~ 33575296 (-)
AMCG00016895 NA coding downstream 121124 33513627 ~ 33520074 (-)
AMCG00016894 NA coding downstream 161743 33474010 ~ 33479455 (-)
AMCG00016893 map3k3,LOC102777599 coding downstream 167387 33439552 ~ 33473811 (-)
AMCG00016907 nxph3,LOC105012985,LOC105898539,LOC107092790,LOC106601594 coding upstream 235124 33877103 ~ 33880678 (-)
AMCG00016908 NA coding upstream 358618 34000597 ~ 34008800 (-)
AMCG00016911 LOC105028465,LOC108426558,LOC107655803,LOC107557242 coding upstream 572920 34214899 ~ 34263010 (-)
AMCG00016931 NA coding upstream 1449474 35091453 ~ 35096502 (-)
AMCG00016936 NA coding upstream 1593613 35235592 ~ 35245651 (-)
G16505 NA non-coding downstream 6859 33634127 ~ 33634339 (-)
G16502 NA non-coding downstream 12279 33628100 ~ 33628919 (-)
G16422 NA non-coding downstream 312857 33325086 ~ 33328341 (-)
G16378 NA non-coding downstream 348949 33292031 ~ 33292249 (-)
G16377 NA non-coding downstream 356971 33284014 ~ 33284227 (-)
G16510 NA non-coding upstream 999 33642978 ~ 33643661 (-)
G16511 NA non-coding upstream 2230 33644209 ~ 33648440 (-)
G16519 NA non-coding upstream 17654 33659633 ~ 33662283 (-)
G16522 NA non-coding upstream 26617 33668596 ~ 33673557 (-)
G16533 NA non-coding upstream 129729 33771708 ~ 33806422 (-)
AMCG00016891 limd2,LOC107674139,LOC107658411 other downstream 127619 33488725 ~ 33513579 (-)
AMCG00016889 LOC107570748,LOC106906011 other downstream 206547 33391789 ~ 33434651 (-)
G16356 fzd2,LOC107583044,LOC107658461,LOC107729561,LOC106607305,LOC106601035 other downstream 462315 33176076 ~ 33178883 (-)
AMCG00016859 NA other downstream 1133879 32497507 ~ 32507319 (-)
G16247 NA other downstream 1217760 32423058 ~ 32423438 (-)
G16563 NA other upstream 464711 34106690 ~ 34107941 (-)
AMCG00016938 NA other upstream 1754013 35395992 ~ 35399030 (-)
G17032 NA other upstream 4116178 37758157 ~ 37758471 (-)
AMCG00016959 NA other upstream 4233271 37875250 ~ 38058939 (-)
G17421 NA other upstream 7574672 41216651 ~ 41217231 (-)

Expression


Co-expression Network