G16552


Basic Information

Item Value
gene id G16552
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 34104456 ~ 34105687 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU20560
ccaaactttcaacTTCTACCACATCggtggggagtttgttccagattgtgacaactctctgtgtgaataagtgtctcctgttttccgttttgaatgccttgaagcacaatttccatttgtgtccccgggtgtgtgtgtccctgctgaactggaaaagctcctctggtttgatgtggtcgatgtcatACCAATAAACAATGCAACGCCAGTATTTTGAaggtattaatattttaatggagAGGGACGGACAGACGCACAGACAGATGGatgagcagggagagagagacatacagcGGGACAGAAAgaagcacagagagacagacacaggcggggagggagggacagacacagTGAGTGTTGACGTCGTGCTGTGCATTGTGGTGTAGTTTCGGGCAGCGTAGTACCAGGCACCATGTGTGAGACTCATATCTTAtgatctctctttctccttgCAGTATGGGGGGGCTATCCCCAGGGGCCGTAGGCTGTTCCAGGAGCTTACCAGACCCCCACTAGGTAGGTaactgcagtgtccagtcagtcagaCCGTTAACTCTCACGTGTGCAGACTACAGGTCCAGCCGTTAACTCTCACGTGTGCAGACTACAGGTCCCGCCATCATACCAGTAAACAATGCAACGGCAAAATTTTGAAAGTATTAATGCTTTAAAGGAGAGGGACGGAAGGACGCACAGACAGATGGATgagcagggagggagagacagacgcacagagaaacagacacgggcagggagggagggacagacacagTGAGTGTTGACGTCGTGCTGTGCATTGTGGTGTAGTTTCGGGCAGCGCAGTACCAGGCACCGTCTGTGAGACTCATATCTTAtgatctctctttctccttgCAGTATGGGGGGGGATATCCCCAGGGGCAGTACGCTGTTCCAGGAGCTTACCAGACCCCCACTGGGCAGGtaactgtagtgtccagtcagtcagtcagtgttaatgtgctgtagtgtccagtcagtctgaccgtgttaatgtgctgtagtgtccagtcagtcagtcagtgttaatgtgctatAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU20560 True 1057 lncRNA 0.51 3 34104456 34105687

Neighbor

gene id symbol gene type direction distance location
AMCG00016905 spop coding upstream 302646 33791287 ~ 33801810 (+)
AMCG00016906 spop,LOC107754841 coding upstream 330923 33761418 ~ 33773533 (+)
AMCG00016897 s35b1,slc35b1,LOC106601597,LOC107590797 coding upstream 442149 33652917 ~ 33662307 (+)
AMCG00016902 NA coding upstream 476167 33625976 ~ 33628289 (+)
AMCG00016896 NA coding upstream 479921 33619292 ~ 33624535 (+)
AMCG00016910 NA coding downstream 63801 34169488 ~ 34191749 (+)
AMCG00016913 ptrf,LOC103029568,LOC105905374,LOC105028466,LOC107742253,LOC107664665,LOC103381660 coding downstream 163311 34268998 ~ 34271418 (+)
AMCG00016914 ptrfb,LOC105935706,LOC102209316,LOC102787483,LOC101465061,LOC103482185,LOC103142478 coding downstream 188526 34294213 ~ 34296833 (+)
AMCG00016912 stat3,LOC107653351 coding downstream 205181 34310868 ~ 34340346 (+)
AMCG00016916 NA coding downstream 254540 34360227 ~ 34435938 (+)
G16542 NA non-coding upstream 109074 33993182 ~ 33995382 (+)
G16512 NA non-coding upstream 453167 33651081 ~ 33651289 (+)
G16395 NA non-coding upstream 776114 33325094 ~ 33328342 (+)
G16351 NA non-coding upstream 924017 33180239 ~ 33180439 (+)
G16350 NA non-coding upstream 924516 33179705 ~ 33179940 (+)
G16646 NA non-coding downstream 492135 34597822 ~ 34599917 (+)
G16668 NA non-coding downstream 630650 34736337 ~ 34736549 (+)
G16692 NA non-coding downstream 670138 34775825 ~ 34777047 (+)
G16698 NA non-coding downstream 715510 34821197 ~ 34821413 (+)
G16705 nkiras2,kbrs2,LOC106607286 non-coding downstream 985772 35091459 ~ 35094092 (+)
G16550 NA other upstream 3593 34100315 ~ 34100863 (+)
AMCG00016909 mien1,LOC107566883,LOC107755209 other upstream 4860 34093276 ~ 34099596 (+)
G16546 NA other upstream 56736 34047371 ~ 34047720 (+)
AMCG00016901 NA other upstream 430095 33668593 ~ 33674361 (+)
AMCG00016898 NA other upstream 454376 33630012 ~ 33650080 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other downstream 1052910 35158597 ~ 35204232 (+)
G17193 NA other downstream 4390364 38496051 ~ 38503632 (+)
AMCG00016979 NA other downstream 5133386 39239073 ~ 39254490 (+)
G17697 NA other downstream 8285610 42391297 ~ 42397787 (+)
AMCG00017078 LOC106565757 other downstream 10020527 44126214 ~ 44137931 (+)

Expression


Co-expression Network