G16646


Basic Information

Item Value
gene id G16646
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 34597822 ~ 34599917 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU20676
GGGAGGACACATGAACGCCACTCTGTAACACACCCACTAGCACACCTACAAAGCACGGCTATGGCTTTGGGGTGAAGAAATGAAATGGTGGTTGTGCAGCATGGACTTTCACAGTCGTGTGTGGGACCGTGAGGAAGGATCTTGGACGACACCATGCTCACTTTTCCACAGAAACAATTAGCCTTTTCTACACCATGTGGTGACCACTGCGTTACATGCAGATCTAAGCCTTACCTACACAGTCAATTGGCAATATATATAGTGCCCCCCAACCCCAGACCACTATGACTTGGCCATTGCCTTTATCTCGACTTGGCTTTGTTacctgtatttcagtcctccaGCACCGAGAGGCCGATCTAACCTCCTCTTAAAGCCACTTATTGAGCAGTCATTAATAATCATCCCATTGCGGTACTTCAgtcatctcaattagtcattttATTACTGCAATTATGCTCAATCGCACAAATGGAGCACTGTGCTCCGCTACTGACACTTATTAAATCATGCGTCTGTTTTATGCAAAAGTATTACAGACAATGAGTCAAATTAAAATCTTCACATAATGTGTcaacagaatgttttttttgtaagagatgaaaaaatactgaaatcagaaAATCTATGCAGTAGAATATTTAAACGGGACAGTTTATAAATACCATGTAACCTGGTCTTCTTAAATGGATTAAATGTGCTGTGTGAAAGCTTGCTCTTATGAAGAAACCATATACAGAATTGTTAAAAACAATTGCACACGAGGCTAATATCCTCATTAGAAAGTTGTGAACTGgttgaacaaaaacaatttctTCTTGAATCGGTTCAGgtcatattacattttcagattttagaAAGAAGCACTCGGGTCTGCGTAGATGATTTCCCCCcaatattattactaataattatgattagtaTGATTTATTGTGTGACCTTTATTTTAGACTTACAATAAGTCACAGATAAAGGAAACAATATGTGTTCTTTTCGCCACaatgaaagtgtaaaaatgtgttaaagccACCTAGTCTGGCTCGCTTTATTTGCTATATAACCAGTATCAAAAATAAAGTACTGCTTAAATTGCTTCTGTGACCCCACAGCTGCAGGGACAGTCTcaacctttttttaaacacgTCAATTGATTGAATCAGCACAACCTACTCggcattcttttttctttttggaattAGTCAGAGCTTaatgtgttaatatctttgtaacCGTTCGTTCGACTACAGTCACTAGAGTGGATTGCCAACAGGGACACCTGCAGGAAAATTCACGAATTACAGTTCTTGAAAACAGGTCGAGATAAACGCAAACCCCTAACTATGACATCTGCATAGgtcttttaatatatacagagcCTTTTGTAACCCCGTCTCTGTGCAGGTCCTATTCATATCTTCCTTGGGTTCTTCTGTAGATTTTCAATGTGGAACCAACCATCTTTACCTGGGAGGTTAGGGTGCTAATGCTACGAGCTGGGCTGTAATAAACcaggaatttaaaataatgtataaatatatgtatataatttttgaAAATTCACTGTCTGTTACGAGCAGGGAAATAAGTTATGTAAAAGCACAGCTGTATGTTTGACTTTCAGTAGCTTCAGATAGAATCAACACTTTAACCATAGGtcaagttaaaaaacaaaaggtatgCTGATGCATCCACATTTCTGAGATTTATGTAATGccgtcacagtttgttttttttgcttacaAAAGTTGCCTTTTTTTGGTCTCATTTTTATTTCGCGGGAGCTTTACACTGGTTGTCTCTGTCACACTGTTTTCTAGAGTGCATAGTACTGTAAACGGCAAGTTGCGATTTCATTGGGAAATCCAGTTGATTGAAGTCAAAGCTCTTGTCGACTGTGAAGCAGGCTGGCTGGGAATAAGAGTGGTGATTTTTAGTgtgaagtaaacaaacaaagctaATGAACCACAACAAGCTCCTGGTATGTTCAGTTTAAGTGTAAAAACTGAAGACTCTGACAACATAAAGGATCATTTTCAACAGTTCGAATTGCTGTTGCAGTTGATTTATGATAACTTTTTTAACTTGCTGACATCATC

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU20676 True 2096 lncRNA 0.38 1 34597822 34599917

Neighbor

gene id symbol gene type direction distance location
AMCG00016918 LOC106601024,LOC106607294,LOC103359488 coding upstream 243 34558539 ~ 34597579 (+)
AMCG00016917 NA coding upstream 98170 34481133 ~ 34499652 (+)
AMCG00016915 LOC105013349,LOC103368144,LOC102309899 coding upstream 125188 34444401 ~ 34472634 (+)
AMCG00016916 NA coding upstream 161884 34360227 ~ 34435938 (+)
AMCG00016912 stat3,LOC107653351 coding upstream 257476 34310868 ~ 34340346 (+)
AMCG00016919 NA coding downstream 11726 34611643 ~ 34614856 (+)
AMCG00016921 LOC103352817,LOC104967603 coding downstream 57794 34657711 ~ 34660464 (+)
AMCG00016920 NA coding downstream 79595 34679512 ~ 34698405 (+)
AMCG00016924 NA coding downstream 108380 34708297 ~ 34727383 (+)
AMCG00016922 kat2a coding downstream 127488 34727405 ~ 34757001 (+)
G16552 NA non-coding upstream 492135 34104456 ~ 34105687 (+)
G16542 NA non-coding upstream 602440 33993182 ~ 33995382 (+)
G16512 NA non-coding upstream 946533 33651081 ~ 33651289 (+)
G16395 NA non-coding upstream 1269480 33325094 ~ 33328342 (+)
G16351 NA non-coding upstream 1417383 33180239 ~ 33180439 (+)
G16668 NA non-coding downstream 136420 34736337 ~ 34736549 (+)
G16692 NA non-coding downstream 175908 34775825 ~ 34777047 (+)
G16698 NA non-coding downstream 221280 34821197 ~ 34821413 (+)
G16705 nkiras2,kbrs2,LOC106607286 non-coding downstream 491542 35091459 ~ 35094092 (+)
G16728 NA non-coding downstream 584418 35184335 ~ 35234875 (+)
G16550 NA other upstream 496959 34100315 ~ 34100863 (+)
AMCG00016909 mien1,LOC107566883,LOC107755209 other upstream 498226 34093276 ~ 34099596 (+)
G16546 NA other upstream 550102 34047371 ~ 34047720 (+)
AMCG00016901 NA other upstream 923461 33668593 ~ 33674361 (+)
AMCG00016898 NA other upstream 947742 33630012 ~ 33650080 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other downstream 558680 35158597 ~ 35204232 (+)
G17193 NA other downstream 3896134 38496051 ~ 38503632 (+)
AMCG00016979 NA other downstream 4639156 39239073 ~ 39254490 (+)
G17697 NA other downstream 7791380 42391297 ~ 42397787 (+)
AMCG00017078 LOC106565757 other downstream 9526297 44126214 ~ 44137931 (+)

Expression


Co-expression Network