G16692


Basic Information

Item Value
gene id G16692
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 34775825 ~ 34777047 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU20725
gctgccatacatgtagagatgctgatttaacaaaaatgtgcagtggctgaatatgcacttaaaaaaaaaaacttaagcGGAAATATATCCCTCTAACCATTCAGAACATACTTATATatagtgtgtgggggggcaggcGGTGGCTGTCTACATACACATTACGTTGCAATTATTATCTTTTGTTCATCTTCTTTTAATGCTGGATAAACCTGGTGAGCAGCACTGGTAGGCCATAATTTGTAACCATGGAGTATAATTGGCCTTTCACTGAAAAGCtttttgtaacacttttttttgtgtgcacaAGATGTTCTCCAGATAAATAACTGTTTCAGCTCTGCCAGGACTCTGTGACTCTGCTGTGGTACCAGAGTTCTGCCACTGATTCCGTCTGTTTTAGAAACGCCACATGGCACTGTGGCAGAGTAAGACTATAGCttagtggaaaataaataaaaacattgacaaatgCATGGGTAATTTCTGTAGGCTGCTGAACGTGAAAATGCGAGTCAGCATATGAAgccatgttttaaattgtcaaTGACCTGTTTAGTTGTTTCTTGTCTTTCCACAGTTCCAACAGTACATTCACTATATGTTTATCTGGTTTGGCATAATCTGTCATGCACAGACCAATAATGATTTACAGCTGTTTTGTATGTTCATATacaattctttatttaattgctagcccaaatcaagactttgacctacttgcaaaatattaattacaaacttgtagcctattgtgttttgatttataagcaGTAGAAAGTGACTTCTGACAATAGATATGATAGGATACGGGTTTATACTTTGTGAATTGTGGgaaggtcaaagttttggtCTAGCCCCTAGTGTATAAAGAATGTATTCCACTTGCACTTTAATTCCTCTGTAAGGAAAAAGCAAATTCCTATTGCATAAAGCACCAGTTTAACTGCAATTGTACAGTGCATGCCTGTAACTGACATGTTTGTCTTCTCTATCACTGTTGTTCAGTGaaacttgcttttttttttttttcttatgttggtttgtatttacattgtatggTGTTAACAGCTTTCTTAAGATTATTGCAGTGTGAAGTTCATTCCTATATCAATTACAGTGTTTATGTTTCCCATAGGAATTGGCAATGAGGGAGTAAATCTGTTTATCTCTTTATATGCGAAGAATCCAATAAGGCTTCCTTACCTTTTTCTTATTAAACCTGA

Function

GO:

id name namespace
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU20725 True 1223 lncRNA 0.36 1 34775825 34777047

Neighbor

gene id symbol gene type direction distance location
AMCG00016923 NA coding upstream 2186 34761492 ~ 34773639 (+)
AMCG00016922 kat2a coding upstream 18824 34727405 ~ 34757001 (+)
AMCG00016924 NA coding upstream 48442 34708297 ~ 34727383 (+)
AMCG00016920 NA coding upstream 77420 34679512 ~ 34698405 (+)
AMCG00016921 LOC103352817,LOC104967603 coding upstream 115361 34657711 ~ 34660464 (+)
AMCG00016925 NA coding downstream 147143 34924190 ~ 34927331 (+)
AMCG00016926 NA coding downstream 233318 35010365 ~ 35014666 (+)
AMCG00016927 NA coding downstream 256768 35033815 ~ 35081248 (+)
AMCG00016928 dnajc7,LOC106607285 coding downstream 320543 35097590 ~ 35116668 (+)
AMCG00016930 NA coding downstream 344900 35121947 ~ 35131005 (+)
G16668 NA non-coding upstream 39276 34736337 ~ 34736549 (+)
G16646 NA non-coding upstream 175908 34597822 ~ 34599917 (+)
G16552 NA non-coding upstream 670138 34104456 ~ 34105687 (+)
G16542 NA non-coding upstream 780443 33993182 ~ 33995382 (+)
G16512 NA non-coding upstream 1124536 33651081 ~ 33651289 (+)
G16698 NA non-coding downstream 44150 34821197 ~ 34821413 (+)
G16705 nkiras2,kbrs2,LOC106607286 non-coding downstream 314412 35091459 ~ 35094092 (+)
G16728 NA non-coding downstream 407288 35184335 ~ 35234875 (+)
G16731 NA non-coding downstream 463732 35240779 ~ 35241527 (+)
G16771 NA non-coding downstream 486005 35263052 ~ 35265068 (+)
G16550 NA other upstream 674962 34100315 ~ 34100863 (+)
AMCG00016909 mien1,LOC107566883,LOC107755209 other upstream 676229 34093276 ~ 34099596 (+)
G16546 NA other upstream 728105 34047371 ~ 34047720 (+)
AMCG00016901 NA other upstream 1101464 33668593 ~ 33674361 (+)
AMCG00016898 NA other upstream 1125745 33630012 ~ 33650080 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other downstream 381550 35158597 ~ 35204232 (+)
G17193 NA other downstream 3719004 38496051 ~ 38503632 (+)
AMCG00016979 NA other downstream 4462026 39239073 ~ 39254490 (+)
G17697 NA other downstream 7614250 42391297 ~ 42397787 (+)
AMCG00017078 LOC106565757 other downstream 9349167 44126214 ~ 44137931 (+)

Expression


Co-expression Network