G17006 (plxna1)


Basic Information

Item Value
gene id G17006
gene name plxna1
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 37455176 ~ 37455401 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU21093
CTTTGCATTCAAGGGCCACCCGTGACTCCAGGTTGTCCATCTGCAGCTGCAGGCGTTTGAGGGTGCGGTCAGCATCCCGGGACTTGCGCTTGTAGGCGATGaggacgatgatgatgatgaggaggagCAGGCCTCCTCCTCCGCCGATACCTATAATGGCGGGCAGCGTCAGCAGGCTGTCAGAGTAGATCTGCAGGGTCCCAGGAGAGTACTCGAAACCTCCCAC

Function

symbol description
plxna1 Predicted to enable semaphorin receptor activity. Predicted to be involved in several processes, including generation of neurons; regulation of GTPase activity; and regulation of cell shape. Predicted to act upstream of or within dichotomous subdivision of terminal units involved in salivary gland branching; neuron projection morphogenesis; and regulation of smooth muscle cell migration. Located in cytosol and nucleoplasm.

NR:

description
PREDICTED: plexin-A1, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU21093 True 226 lncRNA 0.59 1 37455176 37455401

Neighbor

gene id symbol gene type direction distance location
AMCG00016951 LOC105894324,LOC105023857,LOC106566981,LOC103373809 coding upstream 895195 36533936 ~ 36559981 (+)
AMCG00016950 NA coding upstream 930545 36501049 ~ 36524631 (+)
AMCG00016949 NA coding upstream 1153283 36299372 ~ 36301893 (+)
AMCG00016947 NA coding upstream 1202961 36241389 ~ 36252215 (+)
AMCG00016948 NA coding upstream 1252974 36102366 ~ 36202202 (+)
AMCG00016960 NA coding downstream 629889 38085290 ~ 38087536 (+)
AMCG00016966 NA coding downstream 866564 38321965 ~ 38336646 (+)
AMCG00016965 NA coding downstream 882244 38337645 ~ 38351463 (+)
AMCG00016970 NA coding downstream 940298 38395699 ~ 38399287 (+)
AMCG00016972 mcm2,LOC106583719 coding downstream 945329 38400730 ~ 38415204 (+)
G17005 plxna1 non-coding upstream 8750 37446172 ~ 37446426 (+)
G17003 NA non-coding upstream 20308 37434358 ~ 37434868 (+)
G17002 NA non-coding upstream 25780 37429153 ~ 37429396 (+)
G17001 NA non-coding upstream 28388 37426547 ~ 37426788 (+)
G17000 NA non-coding upstream 29305 37425666 ~ 37425871 (+)
G17044 NA non-coding downstream 492831 37948232 ~ 37986657 (+)
G17064 NA non-coding downstream 606633 38062034 ~ 38092679 (+)
G17073 NA non-coding downstream 634400 38089801 ~ 38117255 (+)
G17089 NA non-coding downstream 679772 38135173 ~ 38135840 (+)
G17165 NA non-coding downstream 936276 38391677 ~ 38392072 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other upstream 2250944 35158597 ~ 35204232 (+)
G16550 NA other upstream 3354313 34100315 ~ 34100863 (+)
AMCG00016909 mien1,LOC107566883,LOC107755209 other upstream 3355580 34093276 ~ 34099596 (+)
G16546 NA other upstream 3407456 34047371 ~ 34047720 (+)
AMCG00016901 NA other upstream 3780815 33668593 ~ 33674361 (+)
G17193 NA other downstream 1040650 38496051 ~ 38503632 (+)
AMCG00016979 NA other downstream 1783672 39239073 ~ 39254490 (+)
G17697 NA other downstream 4935896 42391297 ~ 42397787 (+)
AMCG00017078 LOC106565757 other downstream 6670813 44126214 ~ 44137931 (+)
G18192 NA other downstream 7199251 44654652 ~ 44656098 (+)

Expression


Co-expression Network