G17064


Basic Information

Item Value
gene id G17064
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 38062034 ~ 38092679 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU21157
atatatatatatatatatatatatatatatatatatatatatatatatatatatataatctctttttttgttttaatactctacagaaatacatacaatacaatttaaaaaaatcttattggggggaaaaaacaaacatttcaaatgttttccatgTTTCTGATGACATCGATGAAGGCAGCCTGTTATCTGTAGCAGTCCTTTTAAAGTCTCTGCTCCTGAATGCAACAGGTCTTGCATTGTTCTCTTCTGCTGCAAGTTCTCACCCATGGGAGAGAGCCAGTCGTCGCAATGAAAATCATCTGCCTGTGCAAAATTCATATCACACAATTCAGTAACTCGACACAAGCTTCAGACCCTTAGAGaagattttgtaattgtatacaGGGCATCTTCAATGAGATACTTTTCTTGGGTGTAAAGAAGAGCACACATTGAATACCTTTTTGGTGGTTTAATAACCAATAATTATACGGTTTTGTCtaataaacagacatttatattATGAAGCATGCATGCTAAGACTTTGTTTACTTGTGCCCCCCTATAATGCATGTACTACAAACATGTCCTGTTAAACACTGAAATTTGAGTGCAacgtttttatttggtcttttcgatcaacaaaataaattggactaataatttaaaaatctgattcacagttcacaaaatacatttatcttcCCTGCAGATGCAAAGCTACCAATCCGCAAGCCTTTTCATATCCACTGTGCATTTAACAAGGCAAGTTCCACATTGTGTAGATTGAAATTTTCGACAGTGGCTGAGTTTGTAAGTCAGGGGAAAGGGCTCACAACCTAGGAAGCCAATATAACAATTGCTttacattgaaacaaatatagatttatatagaTAATACAATCAAAGTGAGTATCATGTATTCTGTGGCTATTCTTTCCATATTCGATCTGGTAGCACTATACTGTGGTCTATGAGAAGCATCTGAAATCTTGTGTTTTACAATAGAATTCAACCTACAGCACTGATCTGAACACTGATCAAATACAAATCACACGAGCCTTCAGCTGTTGTTccgtaaattaaattaattatatttattatatttattattattattattattactatttatattattgtttcaaatgGGATCAACCTTATTCCAGATACCAGTTCCATTTTGATGCTGTTGGGATGAAGCTTCAGTAGTTTGTGTAGGCAGAAGAATTAATACTGAACTCTTTTTAGGAGCGCACATAAGCATCACAGTGGCTGAGGAGGCAATTCTGGGGATCTAGTTGAACAAGCACACAATCCTCAACAGATATCGATATCCTcctctgaaaatgttaaacaaagcATACTTGTACAAATTACACCACATATTCCTTAAATTAGCAACAATCACAGGCACTGACTCCATCTACAGACTTTCACCAAGGCAAGCAGGAACACTGGGTGAAAATAAAAGATGACTGATATATTCTTGGTACTGGTTTTTCCCACATAAAAAAGTAGAATAGTAATACAGATCATGGGTAAATCAGCTAATGGCAGAGAACACAAATTGGATCAGAAACTATTACAGAGCTGATTAACTGTTTGACAGATGTCCTCCTTGGCTCCATGGCTATATCTTTTTATAATAGCTACCATATGAAGTGCTTTTACGCATTATGTATCACTTTAGGTTGCACATGACTGGTGTGGAATTCTTGAGTCTGATTATGTGGCTGATTACAGTTGATCATATTGGTAGTTATTGTGCAGCGATATCCCAGGCCTTTCCCACcaagtgcaaattaaaaactgtgtacaaatataaataaaatttcAAATCGCCATCCACtcgaatttttttttttttttttttttttttttttaatcctttaacAACATCAAGGCCCATTTGTAGTAAAGCCTATTTGaggcaaaagaaaacaagaaacaaaatgtcttaaatgGGTCCTGCTTTAAATCAAGTCCTTGTTCCTCAGGTCTATACATTTCCCCAAAGACTCCACAGGTTAGATATATAGAAGTCTAATAACTTCCCGACTGTGTCCTCACTCCGGATCCCTGGATTTGTGGGTGCTGGAATTGGTTGATGGTAGAAGCCCGCTGTTGGTAGTGCTGTGAGTTGGCAGCTGCCAGCAACCTACTGCCAGACTGCAGCACAGTCTGCCCTGGGCTCGTGGGGCTTAAGGTTCGTAACCCAGATTGGGACAGTCTGGAGTTATGCGATACTGAGGTGGGGTTAACGGAAGCAGCAATGGTGGCTGTGGGAGCCACACTGGAATCTGTAGAAACGGTTTTCAAGGGGTTGCCCTGGGGTAAGGGAGAGGCAGCGGCTCCCAAGGACAGGTTGTTAAACAAGCTGGTCTTTAAATGGCCTCCACTGTACAAATGTGCAACGCTCCCAGAATGCTGCTGGCCGGTGATACTTGGGTGCCTGGCACTCACAGAGtccacagaggaggaggaagagctgACAGGGCTAGTGTAGGCAGCAGGTGGCGGGGGGGCCTCTTGGGTCAGCGTGTGTGAAGACGATCGGTAGCCATGTCCGGGGGAGGGGGCTGAGTGGCTGAAGGAGCTGCTGTGACTGCGGAATGGAGACATGTTCTGCTGAAGGAAGCCTTGAGACTCGGCCTGGGTCCCTTCAGACAGAAGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU21157 True 2659 lncRNA 0.40 2 38062034 38092679

Neighbor

gene id symbol gene type direction distance location
AMCG00016951 LOC105894324,LOC105023857,LOC106566981,LOC103373809 coding upstream 1502053 36533936 ~ 36559981 (+)
AMCG00016950 NA coding upstream 1537403 36501049 ~ 36524631 (+)
AMCG00016949 NA coding upstream 1760141 36299372 ~ 36301893 (+)
AMCG00016947 NA coding upstream 1809819 36241389 ~ 36252215 (+)
AMCG00016948 NA coding upstream 1859832 36102366 ~ 36202202 (+)
AMCG00016966 NA coding downstream 229286 38321965 ~ 38336646 (+)
AMCG00016965 NA coding downstream 244966 38337645 ~ 38351463 (+)
AMCG00016970 NA coding downstream 303020 38395699 ~ 38399287 (+)
AMCG00016972 mcm2,LOC106583719 coding downstream 308051 38400730 ~ 38415204 (+)
AMCG00016975 NA coding downstream 355929 38448608 ~ 38454664 (+)
G17044 NA non-coding upstream 75377 37948232 ~ 37986657 (+)
G17006 plxna1 non-coding upstream 606633 37455176 ~ 37455401 (+)
G17005 plxna1 non-coding upstream 615608 37446172 ~ 37446426 (+)
G17003 NA non-coding upstream 627166 37434358 ~ 37434868 (+)
G17002 NA non-coding upstream 632638 37429153 ~ 37429396 (+)
G17089 NA non-coding downstream 42494 38135173 ~ 38135840 (+)
G17165 NA non-coding downstream 298998 38391677 ~ 38392072 (+)
G17214 NA non-coding downstream 443382 38536061 ~ 38536333 (+)
G17221 NA non-coding downstream 532847 38625526 ~ 38626023 (+)
G17230 NA non-coding downstream 661842 38754521 ~ 38805946 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other upstream 2857802 35158597 ~ 35204232 (+)
G16550 NA other upstream 3961171 34100315 ~ 34100863 (+)
AMCG00016909 mien1,LOC107566883,LOC107755209 other upstream 3962438 34093276 ~ 34099596 (+)
G16546 NA other upstream 4014314 34047371 ~ 34047720 (+)
AMCG00016901 NA other upstream 4387673 33668593 ~ 33674361 (+)
G17193 NA other downstream 403372 38496051 ~ 38503632 (+)
AMCG00016979 NA other downstream 1146394 39239073 ~ 39254490 (+)
G17697 NA other downstream 4298618 42391297 ~ 42397787 (+)
AMCG00017078 LOC106565757 other downstream 6033535 44126214 ~ 44137931 (+)
G18192 NA other downstream 6561973 44654652 ~ 44656098 (+)

Expression


Co-expression Network