G17165


Basic Information

Item Value
gene id G17165
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 38391677 ~ 38392072 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU21282
tttatagtttatttttgaaagtcactgagcaaATGACAATGGTCATTTATTTGACATGGAAATTTAGCATGGATGATGTACAAAAAGGCATGATAACCTAGAGGTTTACAAGCTATTTTATTCTCCAAAAACTGAGCAACAATggtaatttatttcacatggggatttgaaatgtaaatttagTGTGgatgctgtaaaaaaaaaaaaaaaaaaaaaaaggcatgatAGCCTAGAGGTTTCCAAAAACTGgtataacttttttattatttcatacaacaaaaaacaaacggGTCATTTTGTTTGGTCAAAATGGGCCCAAATGAAGAAATGGAGAAGGTCCCTAATGCCCAGAGTTCTCCATACAAGACTCACACTCCAGACTCATTTCTTTCCNNN

Function

GO:

id name namespace
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0006518 peptide metabolic process biological_process

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU21282 True 396 lncRNA 0.33 1 38391677 38392072

Neighbor

gene id symbol gene type direction distance location
AMCG00016965 NA coding upstream 40214 38337645 ~ 38351463 (+)
AMCG00016966 NA coding upstream 55031 38321965 ~ 38336646 (+)
AMCG00016960 NA coding upstream 304141 38085290 ~ 38087536 (+)
AMCG00016951 LOC105894324,LOC105023857,LOC106566981,LOC103373809 coding upstream 1831696 36533936 ~ 36559981 (+)
AMCG00016950 NA coding upstream 1867046 36501049 ~ 36524631 (+)
AMCG00016970 NA coding downstream 3627 38395699 ~ 38399287 (+)
AMCG00016972 mcm2,LOC106583719 coding downstream 8658 38400730 ~ 38415204 (+)
AMCG00016975 NA coding downstream 56536 38448608 ~ 38454664 (+)
AMCG00016974 podxl2 coding downstream 76078 38468150 ~ 38471891 (+)
AMCG00016973 NA coding downstream 87260 38479332 ~ 38492044 (+)
G17089 NA non-coding upstream 255837 38135173 ~ 38135840 (+)
G17073 NA non-coding upstream 274422 38089801 ~ 38117255 (+)
G17064 NA non-coding upstream 298998 38062034 ~ 38092679 (+)
G17044 NA non-coding upstream 405020 37948232 ~ 37986657 (+)
G17006 plxna1 non-coding upstream 936276 37455176 ~ 37455401 (+)
G17214 NA non-coding downstream 143989 38536061 ~ 38536333 (+)
G17221 NA non-coding downstream 233454 38625526 ~ 38626023 (+)
G17230 NA non-coding downstream 362449 38754521 ~ 38805946 (+)
G17274 NA non-coding downstream 687343 39079415 ~ 39079897 (+)
G17361 NA non-coding downstream 1398017 39790089 ~ 39790567 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other upstream 3187445 35158597 ~ 35204232 (+)
G16550 NA other upstream 4290814 34100315 ~ 34100863 (+)
AMCG00016909 mien1,LOC107566883,LOC107755209 other upstream 4292081 34093276 ~ 34099596 (+)
G16546 NA other upstream 4343957 34047371 ~ 34047720 (+)
AMCG00016901 NA other upstream 4717316 33668593 ~ 33674361 (+)
G17193 NA other downstream 103979 38496051 ~ 38503632 (+)
AMCG00016979 NA other downstream 847001 39239073 ~ 39254490 (+)
G17697 NA other downstream 3999225 42391297 ~ 42397787 (+)
AMCG00017078 LOC106565757 other downstream 5734142 44126214 ~ 44137931 (+)
G18192 NA other downstream 6262580 44654652 ~ 44656098 (+)

Expression


Co-expression Network