G17225


Basic Information

Item Value
gene id G17225
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 38707084 ~ 38730835 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU21356
atttcactggaCCCAAGAacagacacggtCATTCAGAAGGCAACCAACTGACTGAGCACATGGAGAGGGGAGACAGGGCGTAGCGACCTCTTGATCGACATCCGAATTAGAAGGCACAGAGCTGGAGAGAGGTAGACCGGTAGAGGCGGCGAAAGACAAGGAGAACAGTGAAGATCTCCCCAGAAGAAGGATTACAAAAAAGGGGGAAAGATTGCtgatgaaagagaaagaggctTAAATCGCTGAAGACATCAGAAGTCTACAGAGTCCTGGTGTAGGTCCCAGCTGGCCAACGGGGCTCAGGTCATCGGTGAACAGGACTGGGGTAATCTCCTCCAAATGGAAGCATTTAGGGCCAATCTGGGTTACTGCCACCAAGGAGCTCTGTGCAGattcggacataacaagaaaacaatgacagATCCATGCTTTATGATACAAAATCCTTCTCACATTCGATTAAATAGGGTTCCCCTTCGCTGGgaggaaaaggagaaataaaCTTTAGCAATGAATAATGAGTCAACTTGTTATAGACATCTTTGAACTTGTCAAATTGAGgatggaggaaaaaataataaaaacataacattacaaatcta

Function

NR:

description
PREDICTED: serine/threonine-protein kinase ULK2

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process

KEGG:

id description
ko03010 Ribosome
ko04672 Intestinal immune network for IgA production

RNA

RNA id representative length rna type GC content exon number start site end site
TU21356 True 602 lncRNA 0.45 6 38707084 38730835

Neighbor

gene id symbol gene type direction distance location
AMCG00016969 NA coding downstream 193317 38506156 ~ 38513767 (-)
AMCG00016968 NA coding downstream 335834 38360534 ~ 38371250 (-)
AMCG00016967 NA coding downstream 487247 38182302 ~ 38219837 (-)
AMCG00016961 NA coding downstream 532760 38171152 ~ 38174324 (-)
AMCG00016962 NA coding downstream 543424 38149505 ~ 38163660 (-)
AMCG00016977 LOC108436697 coding upstream 91273 38822108 ~ 38893519 (-)
AMCG00016978 sec13,LOC107557974 coding upstream 487989 39218824 ~ 39237899 (-)
AMCG00016987 pcbp4,LOC108436686,LOC107677040,LOC107708490,LOC107567193 coding upstream 1096405 39827240 ~ 39855114 (-)
AMCG00016992 LOC105913228,LOC107691887,LOC107701594,LOC108431596,LOC100331190,LOC107592839 coding upstream 2157524 40888359 ~ 40888580 (-)
AMCG00016990 LOC103368898 coding upstream 2258431 40989266 ~ 40990660 (-)
G17171 NA non-coding downstream 311265 38394501 ~ 38395819 (-)
G17170 NA non-coding downstream 313764 38393081 ~ 38393320 (-)
G17166 NA non-coding downstream 315012 38391670 ~ 38392072 (-)
G17164 NA non-coding downstream 320923 38385821 ~ 38386161 (-)
G17149 NA non-coding downstream 366249 38340383 ~ 38340835 (-)
G17250 NA non-coding upstream 5718 38736553 ~ 38803571 (-)
G17254 NA non-coding upstream 16790 38747625 ~ 38860772 (-)
G17275 NA non-coding upstream 348580 39079415 ~ 39079892 (-)
G17277 NA non-coding upstream 383306 39114141 ~ 39114389 (-)
G17294 NA non-coding upstream 570611 39301446 ~ 39303623 (-)
AMCG00016959 NA other downstream 648145 37875250 ~ 38058939 (-)
G17032 NA other downstream 948613 37758157 ~ 37758471 (-)
AMCG00016938 NA other downstream 3308054 35395992 ~ 35399030 (-)
G16563 NA other downstream 4599143 34106690 ~ 34107941 (-)
AMCG00016891 limd2,LOC107674139,LOC107658411 other downstream 5193505 33488725 ~ 33513579 (-)
G17421 NA other upstream 2485816 41216651 ~ 41217231 (-)
AMCG00017014 NA other upstream 3206091 41936926 ~ 41938563 (-)
G17842 NA other upstream 4077876 42808711 ~ 42864616 (-)
AMCG00017051 NA other upstream 4218156 42948991 ~ 42974433 (-)
AMCG00017061 NA other upstream 4549402 43280237 ~ 43286603 (-)

Expression


Co-expression Network