G17230


Basic Information

Item Value
gene id G17230
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 38754521 ~ 38805946 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU21363
atatatatatatatatatatatatatatatatatatatttagtttgtgaAATTGCAAAGTAAAATGAGGAAGAAAAACCCACCTCCTGCTTAGTTTGCCAGGCCTTCATTGCCGTATCAAAACCGGAGCCTGAACTGAACACTTCTCCTCAAGCAGTAAACTATGACGCATGGTGTGGCATAGCTTGGATACACTGGATACACAATATAGGATGTCTTTCCAAGCCCTAGAGGTCTGTCAGCATTGATGGATAGCACATGCAGCTCTGCCTTCTTGGAAAGGGGTCCGAGACTTACATCAGTCCACCTCCCAGATGAAATGGTGAATTGGAGTTAGGCTAATGCTAGAATATTCTCATCCAGTGGCCCAGCAGTGTTCACAGTTGACCAAGGGTAATCCGACGTCAGTTTAACAGGGCCGTGCCTCGTTACATTAAGGGTCTCCCTTCCAGCTCCATGCTCTAATCCCATGTTAAGATCTTTTAAGATACTAAATTGGAACATCCAAATGTCTCGGTGAAGGACGAAACCCAGGTTGTGAGATCCCCCTTGTACGTTGCCATTTCCATGTATatcttataatttttttttttaatttcccctgcCCACTCAAAGCTTTATATTTTTGGATGTGGGTTAGATACCTAAATCAactgtgattgtttttaatttttttatttgattgtgcCGTCATGATTTTTCgtcagcatttttaaactggtaccatttccaaaatattttttaatctgtttgttttttaaacttcattaggcatggatttaaaaacatacGGTCAACAACTTTGTGGTGCCCTTTTGAGTGTCCAACCAAACCCATTTCTATGTACAGTTCCTTCAAGTTCTGAACCAAGGTATGCGTACTACAATGTCAAATGGAAGGAAAATTAAGCACAATTACCTCTAGTTGGAAATTGTTTGTTAGATCAAGAtagtttaaatttgaaatggAACAAGTAGCCTTGTTTGTCTCTTACTGAAATCAGCTTGATTTGGGAAAATAATTTGGTAAATCTACCAGTTACTGCGAAAGGGCAAGCAGTGGACCATTTGTTATTTAGATCCATGCACAGTCCTGTAAAGGAATGATTCAGCGGTGAAATTATTTTGGGATGGATCATTTTATTCAATGATTCTGGCATGGACAGGATGCTCCTGTTCAAACCCCACTTCCTGTACTGTAATACCAAACCTAAATCTGTGGCAATATGACATTATAACTGTTTTACACTTCATTGCTTGTGCAGTTATTtaatagttttgcatttttagagggaaaaaaacaacaaaacaaatacatattttggtaatttttttctttgctttgatagaagacatttgtaatttgaaaactttgtgagggaaaaaaaataaaaaaatattttgaaaatca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU21363 True 1409 lncRNA 0.36 2 38754521 38805946

Neighbor

gene id symbol gene type direction distance location
AMCG00016971 lsm3,LOC107562728,LOC107676354,LOC100705055 coding upstream 229744 38513220 ~ 38524777 (+)
AMCG00016973 NA coding upstream 262477 38479332 ~ 38492044 (+)
AMCG00016974 podxl2 coding upstream 282630 38468150 ~ 38471891 (+)
AMCG00016975 NA coding upstream 299857 38448608 ~ 38454664 (+)
AMCG00016972 mcm2,LOC106583719 coding upstream 339317 38400730 ~ 38415204 (+)
AMCG00016981 NA coding downstream 465327 39271273 ~ 39294718 (+)
AMCG00016980 NA coding downstream 499334 39305280 ~ 39323121 (+)
AMCG00016983 NA coding downstream 569314 39375260 ~ 39396596 (+)
AMCG00016982 NA coding downstream 593811 39399757 ~ 39429289 (+)
AMCG00016984 dock3 coding downstream 863254 39669200 ~ 39788816 (+)
G17221 NA non-coding upstream 128498 38625526 ~ 38626023 (+)
G17214 NA non-coding upstream 218188 38536061 ~ 38536333 (+)
G17165 NA non-coding upstream 362449 38391677 ~ 38392072 (+)
G17089 NA non-coding upstream 618681 38135173 ~ 38135840 (+)
G17073 NA non-coding upstream 637266 38089801 ~ 38117255 (+)
G17274 NA non-coding downstream 273469 39079415 ~ 39079897 (+)
G17361 NA non-coding downstream 984143 39790089 ~ 39790567 (+)
G17381 NA non-coding downstream 1462479 40268425 ~ 40284772 (+)
G17419 NA non-coding downstream 2410549 41216495 ~ 41216809 (+)
G17424 NA non-coding downstream 2439356 41245302 ~ 41245519 (+)
G17193 NA other upstream 250889 38496051 ~ 38503632 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other upstream 3550289 35158597 ~ 35204232 (+)
G16550 NA other upstream 4653658 34100315 ~ 34100863 (+)
AMCG00016909 mien1,LOC107566883,LOC107755209 other upstream 4654925 34093276 ~ 34099596 (+)
G16546 NA other upstream 4706801 34047371 ~ 34047720 (+)
AMCG00016979 NA other downstream 433127 39239073 ~ 39254490 (+)
G17697 NA other downstream 3585351 42391297 ~ 42397787 (+)
AMCG00017078 LOC106565757 other downstream 5320268 44126214 ~ 44137931 (+)
G18192 NA other downstream 5848706 44654652 ~ 44656098 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other downstream 6143088 44949034 ~ 44961601 (+)

Expression


Co-expression Network