G17250


Basic Information

Item Value
gene id G17250
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 38736553 ~ 38803571 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU21395
NNNNNTGACctacttttgtattattttttctttttagatggAGGTTTGCCAATTTAATCTATTAAAGTTCAAATTCTTGGAGCTCTTTTTCTCTTTATGTGCCGCAGGGTGTTATAAAGGTCGTTGCACTGTGTTGCCAGGTCCTAAAAGCCCTTGAGTCTCTTGTTTAATATCATACCTTTTAAAGATAACAAGTGGCTCTCTAATATGGCTATTCATGTCAGTTAAAGTAAGCAGGTTATGAATGCAATTCAGCACTCCTGTTGTCTGAGGTTAGTGAACAACCTGGTTGGATGCATTGCTCCTTGGCTGCCCAACAAAGATATTGCTGGGATTCGATCTCTGGATTTGGGTGTCACCCTTCTCTTTCCTGTATTTTAGAGCCACTACAATAGATTGTTAAAGAGATGTATTTACAGCAAAATTTAAACATCCTGGCTTGGAAACAGCACTATGTCATCAAGTAATAAAAGGCAAAGGCCTAGTGACTAGAGCATTTCAAATTCCAGTCTGTTTGCCAGATCTGCAGCCTTAGTCAGATTGTTGTGTAGATCTGTTTAGCAACAGAGTAAATACAATCGCACCGCATTGGTTAACAAGCTAGCTGTCGCAATCTGCATGAAGAGGGCCTAGGAGAGATCACCATCTTATTTTGCCAATGTGTGGGCTGCTTGGTGGTCCTGTATGGGTTTATCTGCTGAACATGAACAATGAAGgctttttttaaaagacaaaatgtttatttaaaaatgaaaagaaagtttTAGTTATTGTAAAACCcgttttcaaaacacatttttttttgttttatagcttacaggttatttttaagaaattaaattagctTAAAAATTTGTTTCATGATCTAAAAACCTTTTCCCCtttcatatttttacaaaagGAAGGGCTGCTACACaaaagatgtaaaaaaacaaacaaaaaaaaaacaaaccttacatttctTGTGACAAGGTTTTGTTTGAATGCATTTGGGTCGTTTTCTTTCTGGTCTTTCTGTTCGATTTCCATTCTTTTGGTTTTGTAATTAAGAACAGCCATTTGACTAGacatttgtaataattattgtacAATCTATGGCCTTGCGTTAGTTTGGCGATTGGGTTACAGCTGTAACTTTGTCTTATTGAATCTTTGAACATGAAATGTACCGACCATTagaaagaaacaacataaaAGCTATATTTCTATCAAGTATTGCACATTAAAAATCGCAATTAAGCTTTTGCtgattaatgtttaaatgtaaaatgattacTTTGTCTCCAAAAGCACTCTTCACCAAGTGCTGCTCATGTACAGTAtaaagtttttaatacaaaaaggCAAAcgtgaatgaaaaaaataaaacattttaaactgaaaatcgATACACTTCAGATCAGGGGGTGGGGTGTAAGTAGAGTTCGCAGGAGAGCGTCTACCTTTTAAGAAAGATTGGAATTTCAGTGTCAAGAAATTGGGACTGAACAGGTCTGCACATTCTTGATAGGTATTTagttatatttacaaaatgcatttgactTGCTCTGGGTATTATGTATGAATTTTCCTGcctacaatgttttaaattgtatgtataaaaaaaaaaagattgcattgCTTGTCTTCTTCTTAAAACTCAGTTCTAAAAATAAGCAGGTGAAGTTAACATGAAACCGAATAGACATGGGTGGGGGTAGAGGGTGGAAAGAGGGTCCGGACTGCAAAACCAGTTACTACTAATTGATATTTCCAGTGGCAGGggtaatatttgtttaatagcTGGTAGTTACACTCTGATTGATGGGCTTGTTCAATTGTTAAAAGGTGCATATATTTATGTCGAGccctttcattttccttctgcAAAAGCACCTATCCTTCCATGGTGTTTAAGagattttaagtgttttttcttgtagCACTAGTTCAATGTTATGTGCCTTATGTTTCATGGCTGTCCCATGTAGCCAGCAGTACAATAGGAAACACTAAAGGGGGCGAGTTATAAAGTGCAATATACAAAACACTAATGCACTAGGATGGAGAGTAGTGTTAGCCTTGAAGACCTCTGTGCCAGCACCTACATTGCAAAAATGGCTGTCACATGTCAGTCCTTGAGGGGGTAAACCTCAACTGGTAAAGACGGCCCAATGGCATGTGGCGCTTGGCTGCTGATGTTGCTGATTGAGTTACATTCAGTTGTATTTCACaaaaacaacaacaacaacaacaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU21395 True 2236 lncRNA 0.36 3 38736553 38803571

Neighbor

gene id symbol gene type direction distance location
AMCG00016969 NA coding downstream 222786 38506156 ~ 38513767 (-)
AMCG00016968 NA coding downstream 365303 38360534 ~ 38371250 (-)
AMCG00016967 NA coding downstream 516716 38182302 ~ 38219837 (-)
AMCG00016961 NA coding downstream 562229 38171152 ~ 38174324 (-)
AMCG00016962 NA coding downstream 572893 38149505 ~ 38163660 (-)
AMCG00016977 LOC108436697 coding upstream 18537 38822108 ~ 38893519 (-)
AMCG00016978 sec13,LOC107557974 coding upstream 415253 39218824 ~ 39237899 (-)
AMCG00016987 pcbp4,LOC108436686,LOC107677040,LOC107708490,LOC107567193 coding upstream 1023669 39827240 ~ 39855114 (-)
AMCG00016992 LOC105913228,LOC107691887,LOC107701594,LOC108431596,LOC100331190,LOC107592839 coding upstream 2084788 40888359 ~ 40888580 (-)
AMCG00016990 LOC103368898 coding upstream 2185695 40989266 ~ 40990660 (-)
G17225 NA non-coding downstream 5718 38707084 ~ 38730835 (-)
G17171 NA non-coding downstream 340734 38394501 ~ 38395819 (-)
G17170 NA non-coding downstream 343233 38393081 ~ 38393320 (-)
G17166 NA non-coding downstream 344481 38391670 ~ 38392072 (-)
G17164 NA non-coding downstream 350392 38385821 ~ 38386161 (-)
G17275 NA non-coding upstream 275844 39079415 ~ 39079892 (-)
G17277 NA non-coding upstream 310570 39114141 ~ 39114389 (-)
G17294 NA non-coding upstream 497875 39301446 ~ 39303623 (-)
G17325 NA non-coding upstream 590922 39394493 ~ 39396855 (-)
G17364 NA non-coding upstream 991404 39794975 ~ 39800840 (-)
AMCG00016959 NA other downstream 677614 37875250 ~ 38058939 (-)
G17032 NA other downstream 978082 37758157 ~ 37758471 (-)
AMCG00016938 NA other downstream 3337523 35395992 ~ 35399030 (-)
G16563 NA other downstream 4628612 34106690 ~ 34107941 (-)
AMCG00016891 limd2,LOC107674139,LOC107658411 other downstream 5222974 33488725 ~ 33513579 (-)
G17421 NA other upstream 2413080 41216651 ~ 41217231 (-)
AMCG00017014 NA other upstream 3133355 41936926 ~ 41938563 (-)
G17842 NA other upstream 4005140 42808711 ~ 42864616 (-)
AMCG00017051 NA other upstream 4145420 42948991 ~ 42974433 (-)
AMCG00017061 NA other upstream 4476666 43280237 ~ 43286603 (-)

Expression


Co-expression Network