G17325


Basic Information

Item Value
gene id G17325
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 39394493 ~ 39396855 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU21500
atatatatatatatatatatataatctcccatatatatgatttactgtcgcataacaataacacaagtaatagtaatcacacagcacatgcgctgtaaaatgctatagattcaggtagattttaccacagccgggtttatagtggcgcatttagcatctgctagacagacattttttctctgactgtcgcgtctcgattctacttaccggcacagcacgtgttaatactaaataataataataagaagaagaagaattaaaaaaactgttatACCACTTCAACATCTAATGCAACTTcgtgcaatttattaaaatgcaaacaaactttattattctttaattttatacaaattatatccgtCTAAATTAGTGTGGGTGGAGGGTGCTTGCacatcgagtttagcccggcgacgagagcgcttgcgcattaaagtatctcttggttgtgctGGTTATTGTGtcacttctctctcctcatgtctgtctgtgtttctgatgctcatttcttgccaCATCCGACACAtttggaagaaccgggaagaacgcaaagcgtcctaatgacgaaaaatactgccgtaaagagtgggatccattgtaaaaatctgtttttgattCAGGTTCGTTGTCCCATTACTTCTGGCAATACAGTGCATATTTTAACCTGCACTGCATTGGTAACCAGGTATTTAGATATTATAACATTTAGCTTATGATTCAGCCAGTTTTAGCCTTTGTGACAGAGCACATTTTCATCTGTTCGTACAATGTTTGCtcccattaattaattagttcCACTATGTTAATGTATGGGGGTCTAAATAACAGGAATGGAAAACCTGGGAGATCTCAGCAATGGTTAGAAAAGGCTAAGGTTGGTGAAACTTCACAGTCGTCTCTAACACTGTTTCCTGgaaaggcaaagttaaaacagacGCAAGTAACTTGCATTTCCATCCTGCGGAAGAGAGAGTACAGTACTTGCTTTAGAATCTACAAATGTGGGACATGAACACCTCTCTGCGATTCCCAAAGCGCCAGAGAAATTCATTACATACAATCTCTATACCTTGACTATTAAAAAGTACAGAggaatgttatatttaaaatacacagtaggggggggggcagcataCAAAGGTATTCAGAGCATTGACTCAATAGGGCACTTGaattaaattttttccagatgtCGAAACCTTTGAGTTGCAGTCAGAGGAATGCCGTTAGCGCTGTGGTCCCTCGAATGCATTAACAGTTGGGCCGCAGATTAGAGCAGCATGAGGCGCTCTTGGCTCGTCTCTTTGACCCTGCACACAGCAAATTCAGATGACGCGCCTCACAGGCAAGACACCTGAAGACAATGTTCTAAGAGATGAAGGGAAGGATGTTGAAATGTAGAAGGGGAAATCCAGACGGACCGTACAGGCTGCAACTGGCTTCCAGGCTGTCTTGGCTATGAAGAGTTCCGCAAAGCTGGGAAGCCAATTTTGAGGGCCTCAGGCTCAGgttgggccctatagtccagaGAGCACTAGCTTTGGATCTGAGTTCTGTCGTTACATGACTAAGACTCCCAAAGGCTGGTCAATATACAGTTGTGGAATAAGGGATGGGGGAGTTTGCATTTGGATCAGTCTTTCCTGGGCTTGACATGCAGGCCTGGGGTGCAGTTATAAACCTACAGAGAGTTCTCTGCTGTTCGCATTGCTGTCACACAGGGTGCTTGTATGTCATCTTCATCTGTCCAGCTCTAGCACACTGATAGATTAGGATTTGATTCCAAAATGGGGgggataaaaaaatacaaacaaaatattggcAATGCTAAATTTGCTTGTTtagaatgaaagaatgaaagctGGCCTGCAACAGCAGTTATAATGTCAGTTTCAAGTTGCCCGGTACCCTGTCTGCACGTGTCCCCCTCCCTCAGAAAGCGCTGGGGTGTCGGCGCACTCTCGCCTTTCTCGGGTCCACCACCTGCTTCCACTTCATGTTACGCATTTTCTGTCGCCGCTTCTCCCTGAACCACAGCTGCTCACAATACTCGTCGGCGCTCAGGCCTGTGACGCTCATTAGCTGCAGGTAGTCCTTGTAGTGGCGCTGGATCTGCCCGAAGGCCGAGGGGCTGTGTTTCCCACCCACCCCCGGCCCCTTCTCCCCGGCCCGGGCCGGCAAAGTTGCAATGTGCTGCTGCTCGATGACATGGAGGCTGTAGCGGGCGATGGGGTGGGAGAAGGACAGCTCTTCAGCCAGGCAGGAGTAAAGGCCTGCGTCGCCCCTCTCCAGCTGGTGGATGAGGATGCCGCGCTCCAGATGCACAAAGCGTGCCTCGCCTTTCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU21500 True 2343 lncRNA 0.45 2 39394493 39396855

Neighbor

gene id symbol gene type direction distance location
AMCG00016978 sec13,LOC107557974 coding downstream 156594 39218824 ~ 39237899 (-)
AMCG00016977 LOC108436697 coding downstream 500974 38822108 ~ 38893519 (-)
AMCG00016969 NA coding downstream 880726 38506156 ~ 38513767 (-)
AMCG00016968 NA coding downstream 1023243 38360534 ~ 38371250 (-)
AMCG00016967 NA coding downstream 1174656 38182302 ~ 38219837 (-)
AMCG00016987 pcbp4,LOC108436686,LOC107677040,LOC107708490,LOC107567193 coding upstream 430385 39827240 ~ 39855114 (-)
AMCG00016992 LOC105913228,LOC107691887,LOC107701594,LOC108431596,LOC100331190,LOC107592839 coding upstream 1491504 40888359 ~ 40888580 (-)
AMCG00016990 LOC103368898 coding upstream 1592411 40989266 ~ 40990660 (-)
AMCG00016991 LOC103386478,LOC108431596,LOC103131950,LOC102219775,LOC106954144,LOC106583731 coding upstream 1640497 41037352 ~ 41038674 (-)
AMCG00016993 LOC106583731,LOC105007334,LOC107661916 coding upstream 1709836 41106691 ~ 41108161 (-)
G17294 NA non-coding downstream 90870 39301446 ~ 39303623 (-)
G17277 NA non-coding downstream 280104 39114141 ~ 39114389 (-)
G17275 NA non-coding downstream 314601 39079415 ~ 39079892 (-)
G17254 NA non-coding downstream 533721 38747625 ~ 38860772 (-)
G17250 NA non-coding downstream 590922 38736553 ~ 38803571 (-)
G17364 NA non-coding upstream 398120 39794975 ~ 39800840 (-)
G17383 NA non-coding upstream 867742 40264597 ~ 40266261 (-)
G17384 NA non-coding upstream 883683 40280538 ~ 40284823 (-)
G17414 NA non-coding upstream 1476517 40873372 ~ 40878065 (-)
G17423 NA non-coding upstream 1848071 41244926 ~ 41245225 (-)
AMCG00016959 NA other downstream 1335554 37875250 ~ 38058939 (-)
G17032 NA other downstream 1636022 37758157 ~ 37758471 (-)
AMCG00016938 NA other downstream 3995463 35395992 ~ 35399030 (-)
G16563 NA other downstream 5286552 34106690 ~ 34107941 (-)
AMCG00016891 limd2,LOC107674139,LOC107658411 other downstream 5880914 33488725 ~ 33513579 (-)
G17421 NA other upstream 1819796 41216651 ~ 41217231 (-)
AMCG00017014 NA other upstream 2540071 41936926 ~ 41938563 (-)
G17842 NA other upstream 3411856 42808711 ~ 42864616 (-)
AMCG00017051 NA other upstream 3552136 42948991 ~ 42974433 (-)
AMCG00017061 NA other upstream 3883382 43280237 ~ 43286603 (-)

Expression


Co-expression Network