G17491


Basic Information

Item Value
gene id G17491
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 41671378 ~ 41673353 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU21710
ATTTCCTcctgacacactcacagataATTTGAACAACTTTGGAAACCAGCATAGCATTCTGCAACTGCACATTACCTACTGTGCAGCCCCTCCATGAGGAATTGCACAAAGCAATGCCCACAACATCCCTAATAAGAAGGGATAACGATGTCTATTATAAATTGCTGCACTGTCcctcatttaaataaagaaaggatGAATGAAAACTAGAGCTTATCAAAAGATATATATGCTGAGCAAATCGGTAAATAGCAGATATGGGTACCATATAACACAAATCCAGTGCTATTATAAAGATCCCATTTAGGTTCCACCTTCATCTCTGATGAATGAAAATAACCTGGTTAAACTTTAGAAGGGTGCttacttgtttgcatttctgcTGGTTGTAGAGGTGATGTCCTCTTAGTTGACTGGTTCCCTCTGTAACAACCCAAACAGGGCCAGCAGGCCTCCAGGAAAGGGGGGCACTGGTTCAGTTAGGTCAGCCCCCCTGTGTTGAACAAGTGGCCAACATTGTAGGAAAgattaatgaaagaaaacattctttttaaaataatctgaattgTCAGGTGATATCTAGAGGCATGTTTGCAGTAGACACCTGGTTGTGTGAGCTTGACCATTTCATGGACCGGTAAAAGTAtgtgttaattataaacaacAACTGGAAGGATTAATGGCACTAAAACATCAAAGCCTTAATTACAAAGACTAACATTCATAGACAATCACCTATGCTTTGGGAATAAGGTCAAAATCCAGCCAGGTGGTAAACCTAAATATCGGCCACATACACTGaaaatttgtattgaaaaataagGAGGATGCCATCGGTCTGACAATCTTCAAAATCCTCAACCCTCAATAGACTATTGGGTCGAGATTGTGTATAATTGAACGGGCATTATTCAAAAGATGGTGACATCTGTATGGAAAATAGGATGACGTTTCTTCTAGTTGCTTAGCACTGTACATGGTTTGGTGTGTTTTGGGGACATAACATATTCAAAATGAGTAGAACAGGAATGTACAGTTTTCCAGCCTGGTAATGGGCCTTCTAAAGATGCGTCAGGGCAGAAAAGTATCATGAAAAGAAATTTAAAGGGATAGTTAAGAGTTTTACCAAATCAAACCTCATGTGTTGATTCTATTAAGATCATGGTATTTGCACCGTGTCTAAAAGGGTATCcagtctctttttttcttcacactttTCATCATGAGTTTTCATCACCAATCCATCTTAATCAACAATTCATCACAGACAATAAATCACCAACAAAACATTAGTTAGAAATACTTAAAAgtgctataataaataataaataacagatacagtacatattcatttacaaattacataaaacctcaacagagcaaataaactattccaaaacagccttttattaaatcctagATAGCCACAGCATTTCTAGTtcatttttcaactctttaatctcaccCCTTTTATCAATAACTCTGGCTACCTGCCCAGCATAGGCAGacttcctacagaaaactaccaAGCCCAGAATCCATTACTGTCAGTGTGTATACATGGGGTGTGTTCACCTCACACCCGACTTTCATCATTCAGAAAGAATATGACCATTTAGCCAATGAATGCTCAGACTTTccagattctgtgcagaatgactgAAGTCTGTGCGTTGTTTGGGTTTACAATGCGCAGGCTTGCTTGTTCTTTGGTCCTGTGTGTAAATGAAGATGATCCTTGGTGTCATCATGATTGAATACAATGTCAGTTTCACCTGTCAGCTTTGCATTTCCTACATAATGTACAAAATTTAATTCCTTTGTAAAACGTGGATATACCAGCAGGTGATAAATGTAAAAactacagcaaaaaaaatatattaaaaaaaaaaaatctacattgaGTGACTGCCCACAATAAATATTCACTTCAGCGCATTACATTTAGATGCAGGTTCATATACATgtattcctcc

Function

GO:

id name namespace
GO:0046036 CTP metabolic process biological_process
GO:0046131 pyrimidine ribonucleoside metabolic process biological_process
GO:0046132 pyrimidine ribonucleoside biosynthetic process biological_process
GO:0046134 pyrimidine nucleoside biosynthetic process biological_process
GO:0009147 pyrimidine nucleoside triphosphate metabolic process biological_process
GO:0009148 pyrimidine nucleoside triphosphate biosynthetic process biological_process
GO:0006213 pyrimidine nucleoside metabolic process biological_process
GO:0072528 pyrimidine-containing compound biosynthetic process biological_process
GO:0006220 pyrimidine nucleotide metabolic process biological_process
GO:0006221 pyrimidine nucleotide biosynthetic process biological_process
GO:0006241 CTP biosynthetic process biological_process
GO:0009208 pyrimidine ribonucleoside triphosphate metabolic process biological_process
GO:0009209 pyrimidine ribonucleoside triphosphate biosynthetic process biological_process
GO:0009218 pyrimidine ribonucleotide metabolic process biological_process
GO:0009220 pyrimidine ribonucleotide biosynthetic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU21710 True 1976 lncRNA 0.37 1 41671378 41673353

Neighbor

gene id symbol gene type direction distance location
AMCG00017000 NA coding upstream 1001 41658589 ~ 41670377 (+)
AMCG00016996 rnf123,LOC107661915,LOC107726274 coding upstream 175107 41476566 ~ 41496271 (+)
AMCG00016997 rnf123,LOC102204603 coding upstream 206557 41458372 ~ 41464821 (+)
AMCG00016998 rnf123 coding upstream 214176 41450255 ~ 41457202 (+)
AMCG00016994 NA coding upstream 224768 41433692 ~ 41446610 (+)
AMCG00017011 NA coding downstream 270196 41943549 ~ 41952515 (+)
AMCG00017010 NA coding downstream 280394 41953747 ~ 41957167 (+)
AMCG00017017 slmap,slmapa coding downstream 393519 42066872 ~ 42069674 (+)
AMCG00017018 NA coding downstream 421058 42094411 ~ 42100315 (+)
AMCG00017022 flnb coding downstream 436676 42110029 ~ 42110696 (+)
G17482 NA non-coding upstream 65987 41601948 ~ 41605391 (+)
G17424 NA non-coding upstream 425859 41245302 ~ 41245519 (+)
G17419 NA non-coding upstream 454569 41216495 ~ 41216809 (+)
G17381 NA non-coding upstream 1386606 40268425 ~ 40284772 (+)
G17361 NA non-coding upstream 1880811 39790089 ~ 39790567 (+)
G17498 NA non-coding downstream 14657 41688010 ~ 41690199 (+)
G17514 NA non-coding downstream 40457 41713810 ~ 41716989 (+)
G17518 NA non-coding downstream 68997 41742350 ~ 41742773 (+)
G17580 NA non-coding downstream 303042 41976395 ~ 41978666 (+)
G17882 NA non-coding downstream 1379733 43053086 ~ 43112636 (+)
AMCG00016979 NA other upstream 2416888 39239073 ~ 39254490 (+)
G17193 NA other upstream 3167746 38496051 ~ 38503632 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other upstream 6467146 35158597 ~ 35204232 (+)
G16550 NA other upstream 7570515 34100315 ~ 34100863 (+)
AMCG00016909 mien1,LOC107566883,LOC107755209 other upstream 7571782 34093276 ~ 34099596 (+)
G17697 NA other downstream 717944 42391297 ~ 42397787 (+)
AMCG00017078 LOC106565757 other downstream 2452861 44126214 ~ 44137931 (+)
G18192 NA other downstream 2981299 44654652 ~ 44656098 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other downstream 3275681 44949034 ~ 44961601 (+)
AMCG00017167 NA other downstream 7698669 49372022 ~ 49382218 (+)

Expression


Co-expression Network