G17580


Basic Information

Item Value
gene id G17580
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 41976395 ~ 41978666 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU21821
CTGTACAGCCCGATCCAGTCTCCCTTGAGGCGTGAGGTAAGCTGGGGTCCAGCCTTCTCCAGAGTCTTCATGAACTCCTCCTGACTGAACGGACGCAACTGGGGAGGGctctgagagagcgagagaaaatGACAGAGGATAAACACTCAACACACTGGGAACAATCGCTTTAATAAGACAGCTGGACAGTTAGTTGTATAATAGAGTAGAGAAGAGTAAAATACACTAGCAAACAGCTCTCTCATTGTAAGAGCAGTAGATAGTCACCATGTATGTACAGAGGGGTAGTATGTAAACTAACCTAATTCACCATGAACCCAAAAAGGGCACACATGCTACTGATGCTCAGCTAATATACTCTGTCATTTTCCTCTGGCCTGGTGCAGACATATGAATATAGTGAAGCTTCAATCGCTTACAACTGATCTTCCAGTATGAATGTGGCAACCTCTGTTTAAAACTCTTCCCTCTGGCTTTCAGACTGTGACCTCAGGGCCGTTTTGAATACATCTGGGTTTGTGATTGCCAGAGGACATTTCAgaagtacaaaaaatatattatgaatcaCCTTGACAGGACAGCACAGTGGCACTATTCATCCTGACTGTGATCCTCTAGctaatacatacatgttaaatcAGATATAGACTCATCTGCCATGCATCAAGGTTCTTCTTTTCAAAGGTGCGCGTGCATATTCATTTGGAGCTCAAAATGTTGGGAATAGAAACATACATTAGGCAATTTGTACTTACTTTCCACGGTGAAATGCTTTTCTGAAGTGGCATTAAACTGGCCACATACCGTTCCTGAAAGAGAATCATCCACCAAGTTCAGAGTTTAAATGCCCTTGCGCAGTCCAAAATGGCAAGTCATAATACAGTGTTATAATGATCGAATGTGGCAATCAGATTTAGAAAATGTCCCTACCTTTGCATNtttttttgttcattagTAAAGGGAAAAGGGCAGTAGATTTTGCTTGTTTAgcatcaaaaataataattcacaatttAGAAGATCTACTGGTTACTTAGACTGAACTAATCACTTTGAGAAACATGGggaataaggaaaaaaaaaaaaaggtaactTGTGTGCCTTACGTGTAATGATATGCAGATCAAGCTTAATTACAAAGGATACATGGTTATGTCATAAAAGGTTTCCCCCCTTGGTGTACTGATAACACTTCCCCTCAATACAGTTTTGACAGAA

Function

NR:

description
PREDICTED: GTPase IMAP family member 7-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU21821 True 1218 lncRNA 0.40 2 41976395 41978666

Neighbor

gene id symbol gene type direction distance location
AMCG00017010 NA coding upstream 19228 41953747 ~ 41957167 (+)
AMCG00017011 NA coding upstream 23880 41943549 ~ 41952515 (+)
AMCG00017000 NA coding upstream 306018 41658589 ~ 41670377 (+)
AMCG00016996 rnf123,LOC107661915,LOC107726274 coding upstream 480124 41476566 ~ 41496271 (+)
AMCG00016997 rnf123,LOC102204603 coding upstream 511574 41458372 ~ 41464821 (+)
AMCG00017017 slmap,slmapa coding downstream 88206 42066872 ~ 42069674 (+)
AMCG00017018 NA coding downstream 115745 42094411 ~ 42100315 (+)
AMCG00017022 flnb coding downstream 131363 42110029 ~ 42110696 (+)
AMCG00017021 flnb,LOC107712990,LOC107657976,LOC107680511 coding downstream 178013 42156679 ~ 42210307 (+)
AMCG00017019 NA coding downstream 233943 42212609 ~ 42213383 (+)
G17518 NA non-coding upstream 233622 41742350 ~ 41742773 (+)
G17514 NA non-coding upstream 259406 41713810 ~ 41716989 (+)
G17498 NA non-coding upstream 286196 41688010 ~ 41690199 (+)
G17491 NA non-coding upstream 303042 41671378 ~ 41673353 (+)
G17482 NA non-coding upstream 371004 41601948 ~ 41605391 (+)
G17882 NA non-coding downstream 1074420 43053086 ~ 43112636 (+)
G17909 NA non-coding downstream 1257154 43235820 ~ 43236036 (+)
G17969 NA non-coding downstream 1415627 43394293 ~ 43394499 (+)
G17988 NA non-coding downstream 1491404 43470070 ~ 43470846 (+)
G17987 LOC107575789 non-coding downstream 1521504 43500170 ~ 43500476 (+)
AMCG00016979 NA other upstream 2721905 39239073 ~ 39254490 (+)
G17193 NA other upstream 3472763 38496051 ~ 38503632 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other upstream 6772163 35158597 ~ 35204232 (+)
G16550 NA other upstream 7875532 34100315 ~ 34100863 (+)
AMCG00016909 mien1,LOC107566883,LOC107755209 other upstream 7876799 34093276 ~ 34099596 (+)
G17697 NA other downstream 412631 42391297 ~ 42397787 (+)
AMCG00017078 LOC106565757 other downstream 2147548 44126214 ~ 44137931 (+)
G18192 NA other downstream 2675986 44654652 ~ 44656098 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other downstream 2970368 44949034 ~ 44961601 (+)
AMCG00017167 NA other downstream 7393356 49372022 ~ 49382218 (+)

Expression


Co-expression Network