G17697


Basic Information

Item Value
gene id G17697
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 42391297 ~ 42397787 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU21955
ACTCCTGGCATtaaggtacaaacatttcaggactttcctactagcagtttccctcggtttttttttccttagtggaacatctcccattgtcagagctccctgtccccctggtccctagtttaaaagattctcaattactctgcacatacgctctcccaatgcattagccccccttctgtttagatgtagaccatctggtcttctatcccagaagaaagaccaatgctccataaatctaaaaccctcttccctacagcaagatttcaaccatgtgttaaactttctaatctctgcctgtctccctggccatgcatgtggtactggaagtatttcagagaaaactaccgtggaggttctgctctttagtttctttcctaactctttaaatttgtcttgcagaacctctgtccttccttttcctatgtcattggttccaatgtggaccatgaccagtggattccccccggctttggccagtagcccatctactagtttagggagatctgcaacctgaacaccaggcaggcaagatatcatgcgggtctccttatcactagtgtgatctacgcctctaagaatcgactctcctactataactacctccctgttctggggcagagtgggcaccatggtgctcaactgccctcccatcaccctctgagctgtcactgtccaactcggtgtccagcagttggaacctgttgggcatttctagctcttggggtgtctctaagggatgtgcgtgcccttttctgtggttacgacctactaTAACCCAGCAGTtttctacactttcctgctctaagttCTCAACTGTCCTAGTTTTTGGCGTGCACACTATCTCTCTAATTGGCTGATTGAcaaattcttctatatcactacaatacagcgcagatcaacaagctgagcctcaagatcacggaccttgatctctaggacttaaacatgccgacaacgttcacaaatgaaatcttcttggatgagttaatccaggaaaacaataattctgcaaacctgacactgtagtggccacatgcttctaaatgttacagttttttcagttaaatgttacagttttttcagtaaatgttacagtttttaaataaatgttagtttttccagtaaatgttacagttttttcagTTGACTGCGAGTGTCCTTCCCCTAAGCAGCACTTCTGATGAAATGGAAATCATTATGATGTGTAGCATAGCTCTTGTGAGCTCACTGGCTGAATTGAGGGGTTCATGCTCATTTGTAttagtagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaattaacCTCGCACAGAGACCGAATTTGAATatgaatttcatatttcaacTGTTCCCTTTTATCTCCCTCTGTGTTTCCTCATAAGACATCCCCCTTGCTGAGCATTGTTAATGATTATAGACTCCCTCTCCTCTTCTGAAAGTCAATTTGGGATTAACAAGAGCAGGTCCGGACCCACACTCAGGCAGTCAATCATTAAACGCACAATAGAGCAACCCACAATCTTCATCCTGACAAAATAACATGGGCAGGTTTGATTTTCATTGGAGGATTCCGCTACATGCAGCCCAGCAACCCTGCCTCATAAATTTCCCAGCCCACATCTACCACCGCCAAACCGCCAAACTACTGCACTGGTGCGCAGGGATACTCTTGATGCATTTCGGGGGAAAATCTTTCATCTTTTTACTGAGGCCTTCTTAGGAGTGCTCAGAGAAAAGAGCTGACTAGGGCCTGAGAGGGTAAAGAAGTCAATCCTCATAATACGCATTTCACTGGTCATGCTTCCCCAGTCACAAGACCCCTCTGGCAGTTCCTGGCCAACAGGCAGTGAGAGCTGTGAGAGTGACAAACCAGCAGAAAAACCTGCCCCAGAGCCCAGCTTTCACACCCATCTGTACAGGCTGTTTGGACGAGAGAAGGCCGAATACTTCCTCAGGCCCCAGTCCCCTCATACAAAGACAAGCCCCTGGGTGCTTCGGGTCCTGGAGCAGATGGGAGGTGAGTGCAGAGGCGCTGTGGAGGACCCTCAGGGAACAGTCGCACCTGCAGCTGATGAAGATGGAGCCTCTGTTCCTTCAGACCCCCTTAGCCTGGAATGTGAGCAGCAGCCCAGCGCGCAGGAGGAGGCGCCAGCAGCAGAGTGGATTGGTGGGCCTGATGTAccgctcagctcagctcagccaGGACCACACCAGACTCTTCATCACCAGCAACCCCCTCCCCAACCTCAGTGACCCCTGTGGTGAGGAGGGGCCCTGCAGATTCCTCCTGCAGGAGCCGGCactgggggctggggggggtcCCCAAGGGCTGAGGAATCGCGTGCAGGAATGTCAAAGGGGAACACTGAAGAGCTGTGCCATTTCCAGGTCACCTGGGAGGAGTGGGTTGGCTGATGAAGCAGATGGAGTGGACTTCAGGACCAGGTGttcacactgcaagaagaaagGTAAAAGACAGAATCTCTCGAGAGCTGGCAGAGTTTCGCTGCCCCCCCTGAAGGTCAGAGTCCAGTGTCAGCTGGGAAACAGAGAAGGGACAGAGCCACCACAAGAGAGGCCACGGCTGCACATCCCTCCTCTCCGCCAGCCAGCTGGGCCCTGAAATACTAGCCTCTTGACCCCGGTTGTAGGCTCTCTTACATGAAAAAAGCTGCTGGGAGCTACAGACATTGAGGCGGGCTTCAATGTAGGGAGCAATTGTGGACGTCATCACACTCAGGGGGATTGATTTACAGGGTGTGTCTTCCACAATCCACCAATATAGCATTGTAGCTGCTGAtttaagtgaaaatgaaaaggcaggTTTTTTCCTTGTAAAGTGCACTCTGTCAATGGCCAGCATGCTCCACTAGAGGACAGTATTGCATCattatacagttaaaaaaaaaatatgcaccTCTTGATTTCCAACGCATCTGTATTAAAAGTtggataagaaaaataaacgtACAAATGTACCTGTTTTCCAAAACGGATTTGTTATgcatcaatatatttaaaaataaatttcagttttgctatgtattctttaaataaacaaagaagcaACTTGCCAAAATGTAATAACACTCAAATCACCGTTTCTTCatgtaaa

Function

GO: NA

KEGG:

id description
ko04390 Hippo signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU21955 True 3131 TUCP 0.47 7 42391297 42397787

Neighbor

gene id symbol gene type direction distance location
AMCG00017026 NA coding upstream 14362 42352071 ~ 42376935 (+)
AMCG00017032 NA coding upstream 80090 42310053 ~ 42311207 (+)
AMCG00017033 kctd6b,kctd6,LOC107570288,LOC108436290,LOC107671957 coding upstream 100466 42289746 ~ 42290831 (+)
AMCG00017024 pdhb,LOC107721006,LOC107745408,LOC107593072,LOC107658396,LOC107586915 coding upstream 115614 42268889 ~ 42275683 (+)
AMCG00017025 NA coding upstream 123584 42246354 ~ 42267713 (+)
AMCG00017027 NA coding downstream 30410 42428197 ~ 42459859 (+)
AMCG00017029 LOC106566459,LOC106572101 coding downstream 79964 42477751 ~ 42509628 (+)
AMCG00017028 usp19 coding downstream 117639 42515426 ~ 42551765 (+)
AMCG00017023 NA coding downstream 155432 42553219 ~ 42561656 (+)
AMCG00017037 LOC106572099,LOC106566462 coding downstream 184565 42582352 ~ 42594094 (+)
G17580 NA non-coding upstream 412631 41976395 ~ 41978666 (+)
G17518 NA non-coding upstream 648524 41742350 ~ 41742773 (+)
G17514 NA non-coding upstream 674308 41713810 ~ 41716989 (+)
G17498 NA non-coding upstream 701098 41688010 ~ 41690199 (+)
G17491 NA non-coding upstream 717944 41671378 ~ 41673353 (+)
G17882 NA non-coding downstream 655299 43053086 ~ 43112636 (+)
G17909 NA non-coding downstream 838033 43235820 ~ 43236036 (+)
G17969 NA non-coding downstream 996506 43394293 ~ 43394499 (+)
G17988 NA non-coding downstream 1072283 43470070 ~ 43470846 (+)
G17987 LOC107575789 non-coding downstream 1102383 43500170 ~ 43500476 (+)
AMCG00016979 NA other upstream 3136807 39239073 ~ 39254490 (+)
G17193 NA other upstream 3887665 38496051 ~ 38503632 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other upstream 7187065 35158597 ~ 35204232 (+)
G16550 NA other upstream 8290434 34100315 ~ 34100863 (+)
AMCG00016909 mien1,LOC107566883,LOC107755209 other upstream 8291701 34093276 ~ 34099596 (+)
AMCG00017078 LOC106565757 other downstream 1728427 44126214 ~ 44137931 (+)
G18192 NA other downstream 2256865 44654652 ~ 44656098 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other downstream 2551247 44949034 ~ 44961601 (+)
AMCG00017167 NA other downstream 6974235 49372022 ~ 49382218 (+)
AMCG00017173 NA other downstream 7004744 49402531 ~ 49403845 (+)

Expression


Co-expression Network