Gene
RNA
| Item | Value |
|---|---|
| gene id | G17987 |
| gene name | LOC107575789 |
| gene type | non-coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030122.1 |
| NCBI id | CM030122.1 |
| chromosome length | 54868152 |
| location | 43500170 ~ 43500476 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| description |
|---|
| PREDICTED: receptor-type tyrosine-protein phosphatase zeta-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU22305 | True | 285 | lncRNA | 0.47 | 2 | 43500170 | 43500476 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00017065 | NA | coding | upstream | 115321 | 43371658 ~ 43384849 (+) |
| AMCG00017066 | NA | coding | upstream | 130787 | 43365827 ~ 43369383 (+) |
| AMCG00017055 | NA | coding | upstream | 180857 | 43317690 ~ 43319313 (+) |
| AMCG00017056 | NA | coding | upstream | 185219 | 43308695 ~ 43314951 (+) |
| AMCG00017054 | NA | coding | upstream | 375767 | 43118218 ~ 43124403 (+) |
| AMCG00017076 | lrrn1,LOC102780565 | coding | downstream | 44178 | 43544654 ~ 43546804 (+) |
| AMCG00017073 | NA | coding | downstream | 187584 | 43688060 ~ 43731559 (+) |
| AMCG00017072 | itpr1,LOC102304252,LOC102779610,LOC102203222 | coding | downstream | 268382 | 43768858 ~ 43773452 (+) |
| AMCG00017071 | LOC102304252 | coding | downstream | 280948 | 43781424 ~ 43795570 (+) |
| AMCG00017068 | NA | coding | downstream | 306488 | 43806964 ~ 43814318 (+) |
| G17988 | NA | non-coding | upstream | 29324 | 43470070 ~ 43470846 (+) |
| G17969 | NA | non-coding | upstream | 105671 | 43394293 ~ 43394499 (+) |
| G17909 | NA | non-coding | upstream | 264134 | 43235820 ~ 43236036 (+) |
| G17882 | NA | non-coding | upstream | 387534 | 43053086 ~ 43112636 (+) |
| G17580 | NA | non-coding | upstream | 1521504 | 41976395 ~ 41978666 (+) |
| G18077 | NA | non-coding | downstream | 601550 | 44102026 ~ 44103399 (+) |
| G18084 | NA | non-coding | downstream | 616490 | 44116966 ~ 44201038 (+) |
| G18125 | NA | non-coding | downstream | 876517 | 44376993 ~ 44377228 (+) |
| G18127 | NA | non-coding | downstream | 886967 | 44387443 ~ 44387949 (+) |
| G18186 | NA | non-coding | downstream | 1122891 | 44623367 ~ 44714164 (+) |
| G17697 | NA | other | upstream | 1102383 | 42391297 ~ 42397787 (+) |
| AMCG00016979 | NA | other | upstream | 4245680 | 39239073 ~ 39254490 (+) |
| G17193 | NA | other | upstream | 4996538 | 38496051 ~ 38503632 (+) |
| AMCG00016934 | acly,aclya,LOC103369716,LOC108273769 | other | upstream | 8295938 | 35158597 ~ 35204232 (+) |
| G16550 | NA | other | upstream | 9399307 | 34100315 ~ 34100863 (+) |
| AMCG00017078 | LOC106565757 | other | downstream | 625738 | 44126214 ~ 44137931 (+) |
| G18192 | NA | other | downstream | 1154176 | 44654652 ~ 44656098 (+) |
| AMCG00017099 | cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 | other | downstream | 1448558 | 44949034 ~ 44961601 (+) |
| AMCG00017167 | NA | other | downstream | 5871546 | 49372022 ~ 49382218 (+) |
| AMCG00017173 | NA | other | downstream | 5902055 | 49402531 ~ 49403845 (+) |
