G18066


Basic Information

Item Value
gene id G18066
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 43837177 ~ 43891907 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU22403
attttatgggTTTCAGTcactgagggggaaaaaaacaaatgcaataaacacaGACAAGAACATTCACCTcaataaaaatgttcacttttcCTTATTTACAAAGTttgtaattgaatgttttttgtttacacaTGCAATTTTAATGCACAGGGAAAACACATCTTTCTTTCCATAATAGTGTCTGAATACCATAAAATGCTGAAAGCAGTTAGTAGATCAACACATCAAATACATTAGCTTTACCTACAACcctgattaaatatataaatagtgacCTGGTCCCCACAGAAAGCATATAAACATccattttctgtctaattaGGCACAATGCAGCACAGATAGATAGAAAATAAAGCGAAACCTTGCCACTTTAACTGTAGAGAGCAGTAAGAAGGAAGTAGCTGGTAACTGCTGGATAATGCTAAAAGCACCTACAATCAGTATAGGGTGTGTGGCAACATGCTTTAACTAGTCAGAAGAATCATGGTAAACAACTCTGTGTTTATCATGGCAAGGCAGTAACACAGTTATGTACAATCCCTCATCCCCAattttctttgtattctttTGGCTTCATCACTTTGCCTTGtagggaaagggagagggtgGGGCGGGAACATGTGCTTGCCCTCTCACCGTTTTatggttaatttgttttccatcttttttttttttttaacatgtctTCCTGAAACAGGCCTGCTTGCATACTGGAgcatcatttatatttagaagGTCAGGTTTCACAGTGAGTTCATTTTGCATTCCTAGGTTCAAATCTAATAAAGacaagactgtgtgtgtgtgtttggggggtaGGGGGGGATCCACTGGAATCTACCTACACCACAAAATGGCACATTTTGGCACAACTGGAAGGTTAATAGCTGAAATAAGAACTGAGGGCGTAAATGGCAGAGGCCTTAAAATAGGCAGAAGGCTGCAGGCAGATCCTCCACATTACAAATCTTGGAACATGAATACTGGGCCTCAGTCTCTTATATAAATTGTTTCCAGCTCCTAAAAAGTGTCATGTTTTCAATTACAAAGGGAATTTTAAATGGTATTAATATCCAAAGCTGACATTTAAAATGGCCTAAATGCACATGTTTTGTTAATTGAagaatgtaattaaacaatggAGAGCTCAAAAGGCCTGGGATAGATATTGAGGCACACTGACATAGCTGGGGACAGATCATACAATACCTGCTATATGGATATTTGCAAGGTTTCAGGTCTAATAGcgtttaatgcaaaatgtatcaCAAATTGCCATTAGAATTAAAGATGAATATTATGTGGCCTGAATAatgagaatttaatttaatttataatcttttttaaGCACGTTACATTGAAGCAATACTTATAATGAGCATGAAATGTCTAATTGATGTGAGTAGTAAATTTCAAAACCTCAGCTTTTGGTATTCCCCTTCCTTGTGGCAGGGGTGGACATTTCTCTCTATTCCCTGTTCTTTCTCCTCACTTTTGCACTGTGGCAGAGCAGACTGAAAACCAACCAAATTTCAAGAAttgaaaaagaaggaaagttttgaaaaataaaaggtacAATATGAGTCTGTCCACATGGCTAAGAATATGAGAAAAAGCTTTAGTAATAATGGAGGTTGACCATTATAACTCAAGTACTACTTCATTTGCAGtaaccattttcatttgtttccatcTGCACCAATTACAcccattacaattaaaacatttactgatatttaatccagttaattgtgtTCAAATTACAAGTTGATTTTCTCAGACATACAAAACGTATATCATGCCATACCCTACAGATGGTGCCTACTCTAATTGACTCAAGTAAGTCAAGTTTCACTGCTGAAATTGTTTTGAGGTAGTTTTGAGGGGAATGGAGAAATATTTCAAGGAAAAGAATGTCACATCTTAAAGAAGTTgactggataaaaaaaaatgttgggaCTGAAAAGAACAATGCTCAGGACCAATTTCATTGAAATATAACTGGCAAGCATCCCAagataacaaaagaaaacccaataaaataatttctcatAGCATCTGTGGAATTGTGCCACTGATTTGTCATTTTGAGATCGTTCTTAGCACAAACACCAACTGGAAAATTGTCtttggcctctctctctctctcaaaaagaTGTTAcaattgggtaatatttatttcaatagatCCTCATGGgtgttttttggtgtttttgttgatGAGGGACAGCGAGGTATCTAATACTGTTCTACGGAGCtctaggaagaaaaaaaatggcaaagaaATTACCAAAGCTGCCTGACCAGGCTTCACTTTTCCTAATAGAACTTCCCAGCCACACAAGCTCTGTAAAGAGAGGCAAGGTTTAAAGATGACCACTTCAATGTATTCATTCAAGACAATTATGTGCATACAAGAACATAtcaaaacaaggaaaatgcTAAGATGTGGGGAGGCACAGATCACCAGCAATCTAATAAagatataaatgcaaatatgtttaaGACTGGTAAATAAAAATCGGTAGGATGAACAGAAAGTGGTCCACATCATGTGACCAATTATTACAGGTATTACctaaacagtttaatttaaggGGAAACGTTTATGAAACATACATCAATTTGGCATTGGATTATGATGTCCATCTCTTCCATCAATGAGTCATTCTATGGGAGAAGGGTACCAAATCCAGTGTCCCAGTGACAGACTGAACATGCAATATTATCTCTTTTCAGTAAGGCATAGTGTGAACAACATAACTCCCAAACAGTTCCCTGTGGCTATCTGTTAACCAGGTCAGAGACAACAAGGCATTGTGCGGCACCCTTTTCCTACAGAATTTCCCAAAGCACATTCTGACACACATGTGGGGGGTTACAAGCATAGATTTTTCCAGGGTACAAGAAATCCAGTTTAAACCATGCTGTTAATAGTATGGAAACATCTGTGACTTCTTTCACTTACTGGCATGTTTtgtagattaaaacaaaaagaaaaaaagtgcaaaatgtgtTCTGAGAACTGCAGGAGAACAAACCccatttcttctttttatacAAACTAAGCTACAATTCGCATAATTTAATTGACTCCTCCTTGTGCTTTTACATCACTGTCttcaacattttatcatacaCTTCTTCTTTTAAGCATatttacacaagtacattaAATAAGGTGGGGGAATGTCTAGAGTTGTCATAATATCTTAACTGCTTCACAGAGAGACCCACAGTGAATTTGACCAATCAAGCATCATGATAATCACAAGAGTTACAATCATCCAGGTTAAAAAGCAagcctgtttatttttctttcaggatTTTATATGTGTACTTAGTCTTTTTTGTACCCCAGACATAATCCATGCTCTAATGCTGTTTTGGTCCAGTAGTCAGAGCTATTGCAGAAGGCACTTTCAACTCTGCAGACCACTCTAGTAGACAGAAACAGCATTGCAGGTTTTAACTGACACTAGAAAATTACACAGGATTCTTGTTGCAAGACTCCAGAGTTACATACATCTTTAATCTTTAAATCTGATACATTCAAACTCCGAGATATATATGTTGACTTCAGCAAACCACACATTGTGATATATCTTTTCAGAAGCTGAATGGTTTTCTTACTCCAAAGGTTTGCTACAGTTGGAAAAGTTTTGGACTATGATAAAATGtatcacattattatatatatatatattttttacctgtaCAGAGACAACTTGTTTTGTTATTACCCAAAATGTAAACTTCCTAAAATTAGTACAACCTCACATAACCAGATTTAAATTGGCAGAATCACTTGTAAACACACTAATATTCAGTGGCTAGGAGAGGGAACAAAAACTCAATTTGCCCAACATACAGTATGGATATAGCTCCCATCTCTTCAGAAAAAATATCAGATGAATGTAAAGTTATCTACTTGGCAAATAAAAGTATCTGCTGCAGAACTCCTCTTACTCCacaggtgtatttaaaaatgaaaaatacctGTGATTTGGCATTGTGAAGGCATAGGACATGCTGGGCTGATCTACATTTACCAACGTGTGACAGTTCTCTAGCTTTCGCTTACAGTATCATGACAACTCTAGGATGTTAAGCGGGTCGTTGTTACCGACGGTTACACAATCTTTAGCAGTACACAAAATGGACCTTGAGGGAAATGAAGAGCGGGGCTACGAGAGAGACAGTGAGTCGTGAATAAGGATTACGTCATCACAGAGTGAGCAGGGTGATTTTGGGATTGATATGGCCGACAGGACGAGGGCGGGGGGTTCAGGCCTCAGCTCCTCCGGGACTTGGAGTGCTGGATAAGCCACTGCAGTGTGATAT

Function

NR:

description
PREDICTED: AP-2 complex subunit beta

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU22403 True 4344 lncRNA 0.37 3 43837177 43891907

Neighbor

gene id symbol gene type direction distance location
AMCG00017059 crbn coding downstream 472308 43344470 ~ 43364869 (-)
AMCG00017057 NA coding downstream 535369 43297944 ~ 43301808 (-)
AMCG00017058 NA coding downstream 540888 43291325 ~ 43296289 (-)
AMCG00017064 NA coding downstream 566208 43155639 ~ 43270969 (-)
AMCG00017062 nr2c2 coding downstream 681544 43131350 ~ 43155633 (-)
AMCG00017077 NA coding upstream 210111 44102018 ~ 44125909 (-)
AMCG00017085 NA coding upstream 564871 44456778 ~ 44458554 (-)
AMCG00017086 gnai2b,LOC108271854,LOC107723915,LOC107587570,LOC107696468,LOC107595419 coding upstream 591704 44483611 ~ 44503250 (-)
AMCG00017087 NA coding upstream 674013 44565920 ~ 44566162 (-)
AMCG00017089 NA coding upstream 681617 44573524 ~ 44600280 (-)
G18015 NA non-coding downstream 203755 43633221 ~ 43633422 (-)
G17910 NA non-coding downstream 601141 43235805 ~ 43236036 (-)
G17754 NA non-coding downstream 1285404 42550325 ~ 42551773 (-)
G17755 NA non-coding downstream 1287759 42544360 ~ 42549418 (-)
G17505 NA non-coding downstream 2231782 41601924 ~ 41605395 (-)
G18101 NA non-coding upstream 244281 44136188 ~ 44138542 (-)
G18156 NA non-coding upstream 485090 44376997 ~ 44377221 (-)
G18164 NA non-coding upstream 495536 44387443 ~ 44387995 (-)
G18219 NA non-coding upstream 907547 44799454 ~ 44829026 (-)
G18352 NA non-coding upstream 1961155 45853062 ~ 45916620 (-)
AMCG00017067 sumf1 other downstream 177575 43633770 ~ 43659602 (-)
AMCG00017060 NA other downstream 528551 43305697 ~ 43308626 (-)
AMCG00017061 NA other downstream 550574 43280237 ~ 43286603 (-)
AMCG00017051 NA other downstream 862744 42948991 ~ 42974433 (-)
G17842 NA other downstream 972561 42808711 ~ 42864616 (-)
AMCG00017091 brk1,BRK1,LOC106565571 other upstream 761548 44653455 ~ 44656905 (-)
AMCG00017105 srgap3 other upstream 1226383 45118290 ~ 45161137 (-)
AMCG00017158 NA other upstream 4597220 48489127 ~ 48494407 (-)
AMCG00017178 NA other upstream 5595290 49487197 ~ 49494144 (-)
AMCG00017232 NA other upstream 7292324 51184231 ~ 51212373 (-)

Expression


Co-expression Network