G18084


Basic Information

Item Value
gene id G18084
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 44116966 ~ 44201038 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU22423
acctttggcaccaattacagactcaagtctttttgagtatgatgctacaagcttggcacaactatttttaagcagtttctcccattcttctttgcaggacctctcaagctccatcaggttggatggggagcggcggtgcacagccattttcagatctctccaaagatgttcaatcgggttcaagtctgggctctggctgggccactcaaggacattcacagagttgtcctgtagccactcctttgctatcttggctgtgtgcttagggtcgttgtcctgttggaagatgaaccttcaccccagtctgaggaccagagcgctctggagcaggttttcatcaaggatgtctctgtacattgctgcattcatctttccctcgatcctgactagtctgccagttcctgccgctgaaaaacatccccacagcatgatgctgccaccaccatgcttcactgtagggaggGTATTAGCCAGGTGATGaacggtgcctggtttcctccatgacggttgccattcaggccaaagagttcaatctttgtttctcatggtctgagagtccttcaggtgccttttggcaaactccaggcgggctgtcatgtgccttttactgaggagtggcttccgtctggccactctaccatacaggcctgattggtggagtgctgcagagatggttgttcttctggaaggttctcctctctccacagagacacgctggagctct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU22423 True 724 lncRNA 0.51 2 44116966 44201038

Neighbor

gene id symbol gene type direction distance location
AMCG00017070 edem1,LOC102794187 coding upstream 261642 43843414 ~ 43855324 (+)
AMCG00017069 arl8ba,arl8b,LOC107095653,LOC103137213,LOC107552649 coding upstream 275376 43825329 ~ 43841590 (+)
AMCG00017068 NA coding upstream 302648 43806964 ~ 43814318 (+)
AMCG00017071 LOC102304252 coding upstream 321396 43781424 ~ 43795570 (+)
AMCG00017072 itpr1,LOC102304252,LOC102779610,LOC102203222 coding upstream 343514 43768858 ~ 43773452 (+)
AMCG00017080 camkv,LOC106582757 coding downstream 163568 44364606 ~ 44371508 (+)
AMCG00017081 NA coding downstream 171850 44372888 ~ 44385986 (+)
AMCG00017082 NA coding downstream 187874 44388912 ~ 44411339 (+)
AMCG00017083 NA coding downstream 244583 44445621 ~ 44453494 (+)
AMCG00017084 NA coding downstream 267081 44468119 ~ 44477790 (+)
G18077 NA non-coding upstream 13567 44102026 ~ 44103399 (+)
G17987 LOC107575789 non-coding upstream 616490 43500170 ~ 43500476 (+)
G17988 NA non-coding upstream 646120 43470070 ~ 43470846 (+)
G17969 NA non-coding upstream 722467 43394293 ~ 43394499 (+)
G17909 NA non-coding upstream 880930 43235820 ~ 43236036 (+)
G18125 NA non-coding downstream 175955 44376993 ~ 44377228 (+)
G18127 NA non-coding downstream 186405 44387443 ~ 44387949 (+)
G18186 NA non-coding downstream 422329 44623367 ~ 44714164 (+)
G18196 usp4 non-coding downstream 468385 44669423 ~ 44670878 (+)
G18197 NA non-coding downstream 470254 44671292 ~ 44671870 (+)
G17697 NA other upstream 1719179 42391297 ~ 42397787 (+)
AMCG00016979 NA other upstream 4862476 39239073 ~ 39254490 (+)
G17193 NA other upstream 5613334 38496051 ~ 38503632 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other upstream 8912734 35158597 ~ 35204232 (+)
G16550 NA other upstream 10016103 34100315 ~ 34100863 (+)
G18192 NA other downstream 453614 44654652 ~ 44656098 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other downstream 747996 44949034 ~ 44961601 (+)
AMCG00017167 NA other downstream 5170984 49372022 ~ 49382218 (+)
AMCG00017173 NA other downstream 5201493 49402531 ~ 49403845 (+)
AMCG00017183 NA other downstream 5512429 49713467 ~ 49727567 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G1678963 NA unknown NC_048584.1 CM023238.2 26462194 ~ 26467953 (+)