G18219


Basic Information

Item Value
gene id G18219
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 44799454 ~ 44829026 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU22596
TTTGTTCATCGTCTGGAGTGGGAAGAGACTTTTTATTACACGCAACAAATATGAAAACCCTGGGAGACTTCCATCAGGAACCTAGCAGCACAAAAAATAGCATCAGTCAAAATGTAGGTGTACACAGAAACGTACAATATAACATATTGCAGCAAACTAAATATAGTTGACATTATATATCCATCCACATTATCCATAAAACTAGTTCAATAGACACTGCAACTCCACTGAggagatattaaaatatttcagatcTAATCATGTTtcatgtgggaaaaaaaaaaaaaaaaccttactCCCACCCTGTTAAACACCACCCCCACACTACTCCCAGACTGATCAAACACATTGACATCTGTACAACTTGACAAGAAGTCAAATCAAAACCACAACCTTTTGGAAAAGGTGATGCGAACTGAAGAGATTCAAGAAAGATTGAGCACACTTGAAGGGGATTGTTTGCTGTCAATTTAGAAAGTAATGTAGACTTTATTCAATGagttgtaaaaacaaatgcatgtcaGGGGAAAATATTTTGAGTTCGAAGGgagaaaaaatgttaaatttaaattttatcATAGGAGtattagagagagagtgagggagggagagtgggagagaaacagagagagtaAAACATGCTTAGTTTCATCCAAAATTGCAACACTAAAACACAAAGGTTTAAACATGTGAATCACATCCATTAGATTTTACTATTCCCAGTATTAATTAGCGAAAACCTCTTATTAAAGTGTTCTTCAACATCAGCATTCTCTGGAaacttctgtaaaatgtatatccctccacaaaaaaacacagaatatacCGCAGATAACTTCTACAGGAATGTCAGATTCAAAACAGAACAGTGAGTAAattggggaaattaaaatattattattagcaccACTCATTCAAAAATGGtagttcaataaaataaaataaaccttacaTACCTAAGAGCCCTTGAGTTAATATTCTCAGCAGTTAATTATAGATTGTGAATAATTTTACatagaaaactaaaaagtgCTAAATACTTGTATACCAGAAGAATAAAGTGACCATAACTGTTTTAACACTGAACACAGATATCAAAGCCTATGTTTCcagatacattttcttatgcATCCTCATAGATTTCAATGCAAAACAACAGAGACACAAGAAAATGTCAGAAACTCCATTTTATACATTAATCTGAGGAGGACATTCATCTcattttattctaaaataataattaaatgctaCTGTCTAAAACTGTTCTGATACATATGGTAGGTCTCATCagcaaatacatttcttcactAAATTCTCCAAGTACAAGAAGTGCAAGTACATTAGTCTGGTTATGGCAGTTCAGATTCTTCTTTCTTTAACCGTAGAAAAGATGGAGGTTTCAAAACAGATGATTCTAACATTATACCACTAGCAGCCTATGACAAGGACAAATTTAcaaaagtgtgttttgtttgttggttggttggtttttgAATTTGTAACTGGAAAACTTTTAATTTTGCCCGTAACTGACAAATCCAGCAATTCTAATACACGAGTCACATAAAATATTCATGTCACCCATGTTGTTAGCAGTTAGACTGGTACCTGTCTGCCAGATTGAATCAGAAGAGATGGAAGTTAAAGTTGGGAGCAAAGAACTGCAAACTGATTTGTCCTAGCTTGTGAAGCCTAATTCTCAAACTTTATATTAGGCtaattttactgttttttgttttcttacgtCTAGTCGTACTTACTAGGAGCACTGCTAAAAATCCAtcaacattttgtgtgtgtgtgtgtgtgtgtgtgcttgagagagagggagagacgaaTTATCACTGATATTGTATGGTTATTGTTAAATCATTTCTTACATTCTTAAACTATTTTGACAAACCCCTTCTCCTTTCTACTCTTCACCTTCCACTGGTATTGCCCCACGCTCCTCCGAGGGTTCATCTTGGTTCTTGCCGACCCTCAACTCTGGCTGAGTGACCCCCGAGTTGTCCGCTCCCTCGATTATTTCCAGATCGAGTTCCTCAAAGGATGATCCACTGCCAATCGATTCGTTGGAGCTTTTGTCACTTTTATCACTCCTGTTGTCGACATCCTCTTGTTCACgggggggcagagagggagTCACTGATGGTGCCAAGGAAGACTCTCGACTGTCAGATATGGCCATGTGGCTCACAGAGCTGGTCTCACTATTGGAGTCCGCCCTGTAATGTCCGTATGTCTGTCTTCCTCATCATCATCCAACACTTTCCTCTCGGCATCCCTCACTTCTGGTACATAGAAATCACTCTGTCTGGCCAGGGGGCTCATGAAGTGTATGACATCTCCACGGTAAATCTCAAGGAAAGGGTGAGCACACAGCTTTCGCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU22596 True 2394 lncRNA 0.38 2 44799454 44829026

Neighbor

gene id symbol gene type direction distance location
AMCG00017092 emc3,LOC101173295,LOC106583189,LOC101079695 coding downstream 107505 44685616 ~ 44691949 (-)
AMCG00017093 NA coding downstream 114575 44662419 ~ 44684879 (-)
AMCG00017095 NA coding downstream 147605 44640087 ~ 44651849 (-)
AMCG00017094 NA coding downstream 164749 44633572 ~ 44634705 (-)
AMCG00017089 NA coding downstream 199174 44573524 ~ 44600280 (-)
AMCG00017101 rrp9 coding upstream 63085 44892111 ~ 44901396 (-)
AMCG00017100 oxtr coding upstream 138247 44967273 ~ 44977924 (-)
AMCG00017106 NA coding upstream 230948 45059974 ~ 45068123 (-)
AMCG00017107 LOC106582845,LOC106565727 coding upstream 416035 45245061 ~ 45257864 (-)
AMCG00017108 NA coding upstream 464633 45293659 ~ 45305316 (-)
G18164 NA non-coding downstream 411459 44387443 ~ 44387995 (-)
G18156 NA non-coding downstream 422233 44376997 ~ 44377221 (-)
G18101 NA non-coding downstream 660912 44136188 ~ 44138542 (-)
G18066 NA non-coding downstream 907547 43837177 ~ 43891907 (-)
G18015 NA non-coding downstream 1166032 43633221 ~ 43633422 (-)
G18352 NA non-coding upstream 1024036 45853062 ~ 45916620 (-)
G18364 NA non-coding upstream 1272934 46101960 ~ 46102188 (-)
G18366 NA non-coding upstream 1273236 46102262 ~ 46106593 (-)
G18405 NA non-coding upstream 1611043 46440069 ~ 46454396 (-)
G18419 NA non-coding upstream 1734068 46563094 ~ 46563573 (-)
AMCG00017091 brk1,BRK1,LOC106565571 other downstream 142549 44653455 ~ 44656905 (-)
AMCG00017067 sumf1 other downstream 1139852 43633770 ~ 43659602 (-)
AMCG00017060 NA other downstream 1490828 43305697 ~ 43308626 (-)
AMCG00017061 NA other downstream 1512851 43280237 ~ 43286603 (-)
AMCG00017051 NA other downstream 1825021 42948991 ~ 42974433 (-)
AMCG00017105 srgap3 other upstream 289264 45118290 ~ 45161137 (-)
AMCG00017158 NA other upstream 3660101 48489127 ~ 48494407 (-)
AMCG00017178 NA other upstream 4658171 49487197 ~ 49494144 (-)
AMCG00017232 NA other upstream 6355205 51184231 ~ 51212373 (-)
AMCG00017234 LOC100690894,LOC102799047,LOC102206238 other upstream 6601661 51430687 ~ 51435239 (-)

Expression


Co-expression Network