G18405


Basic Information

Item Value
gene id G18405
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 46440069 ~ 46454396 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU22837
aaacatgtgATATGTGCTCATAAATTcctgacaaagaaaataaagatgaaaacaCAACACTCTACATTTCTCCAACtaaatcctgctggagaaaaatatattttctggaTTAAATTACAGCAGACTGGCTGCCTTCTCCTGCATTTGAATAAATGGGTTTTAAGTGTCAGTCTTCCTACATTTTGGGATTAGCATTTTTGCAATGCCtcttctgaaaaaacaaaacaaaaagaaaactgcctGTGCAAACCTTGGGAGTCTTAATCtacttaataaaatgttaatctgagaacacaaaaaaatggCGAAGGCTTAGAAGATGtactaattgtatttttttaatgcaaaaacagACTACTCATTGATGCATACTgcagctttttaaattgtggaCCTTTACTCTACTATTCCTTTGGTTCAGTTAAACTGCTGTCACATTTTCTAACACCTTATTTCACCATTATTTTCTTCCACCGCAGAATaagacaggttttttttatgGAGTATTGTTGATTGTAAGGATCTGTAGAATATGGTAAATGTAATGAATGGAAAGTTATCAGTCTGTAAAACTCAAATtgcaaacacataaaaacagtcAATCAGAAATGTTAGCATTGATCTCCCAATTAATCAGGTTTAAATTGCTCCCAAGCATATGTTGTTTGCAGAAAATACACGCTCCTTTGTTTTGCAGAGAAAAAGTACACAGTTTTCAATTGTCTAGAGAACCTAATATGGAGTCTTGACAAACACCTTCCCAGATCcttgaggaaaagaaaaaaaaaatctgtaaaaaacaaacaaacaacccacaacatacacaaaaagaagaagcaaaaaacaacaaccctgcTGACTGAGTGCCTGGTCTCACATTGCCTTGCCTCTCAGATAGACAGCTCAGCTTCAAAGCATGCCTGAAGGGGTTAATGCATTCTGGCACGGCATCTCTTATCTCTCTCTGCACTCATGTCACGCTCTACGAATCTTCGACATCATCATCACAGTCTGCAATGATTAGCAAAGGGTTTCTCTGAGGACACACCTCTAAGAAAGTCCCCCGAGTAGCTGCTgcagttgctgctgctgttgctgctggcCCCGGTGCTGTGTGCTCTGCGGATTGCACGGACGGCTTGGCTCGCTCTCCctgaacagcagcacagctcCTGGAATCTGCGCCTGTAGGCTGTTCAGAGATCTTCACTACTGAGTGCACTTGGTCCCCCAGCTCCTCGATCAGTTTTCTGGGAATCGGCTGAGACGGAGGGAAGCCTACTAACTTCCTCTCGTCTGACTTCAAAGATAATGGTTCCTTCACAGCCCGAGGTGGTGCCTCACGGTCTAATTGAGGGAGTGAACTCGCCTGAGGAACAGGGTTTGCTCCAGCAGGGCCAGTCTGCTGCAGCGCACAGCTCTGCCCTCCGTGTCGACTGCCTTCAGCTGTATCGATGGAGTCCTCCTCTCCTGAATCGGACTCTTCGGTCTCTGTTGACGAAGAGCTTCCGGATTCACTGTCCTCATCCGAGTCGTCCTCGCTGTCCGATTCGGGAATGGTCTCCCTGTACCCAGACGGTTTTCTGCAGCCTTTCTCCTCTTCTTTAACCATTAATGCAGCAGCTTCTAACTCATCTAGTTCAAAACCCAGGTCTGCTTTTCGGAGCAAGGATTTCTGCAGGAGCATGGCGAGAGCACTCACTTTTTTTACTTGGCCTTTTGAATCCAAACACAGTAGTCGGTGATGTAGAGATCATTTAAGATATAGGCAGGATCATTTTCCCTGAAAATCTTGTGAATATCTAAGAAGCACTTCAAAAC

Function

NR:

description
PREDICTED: tripartite motif-containing protein 16-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU22837 True 1821 lncRNA 0.43 2 46440069 46454396

Neighbor

gene id symbol gene type direction distance location
AMCG00017115 NA coding downstream 36768 46386418 ~ 46403301 (-)
AMCG00017116 p4r2a,LOC107551500,LOC108276138,LOC102785172 coding downstream 57201 46372466 ~ 46382868 (-)
AMCG00017111 NA coding downstream 540223 45867027 ~ 45899846 (-)
AMCG00017110 NA coding downstream 774408 45662634 ~ 45665661 (-)
AMCG00017109 NA coding downstream 792851 45623126 ~ 45647218 (-)
AMCG00017122 NA coding upstream 29541 46483937 ~ 46607444 (-)
AMCG00017126 LOC106907125,LOC106941653,LOC107666963 coding upstream 452097 46906493 ~ 46916078 (-)
AMCG00017125 NA coding upstream 463964 46918360 ~ 46930810 (-)
AMCG00017132 NA coding upstream 592877 47047273 ~ 47051406 (-)
AMCG00017137 NA coding upstream 1068386 47522782 ~ 47541031 (-)
G18366 NA non-coding downstream 333476 46102262 ~ 46106593 (-)
G18364 NA non-coding downstream 337881 46101960 ~ 46102188 (-)
G18352 NA non-coding downstream 523449 45853062 ~ 45916620 (-)
G18219 NA non-coding downstream 1611043 44799454 ~ 44829026 (-)
G18164 NA non-coding downstream 2052074 44387443 ~ 44387995 (-)
G18419 NA non-coding upstream 108698 46563094 ~ 46563573 (-)
G18421 NA non-coding upstream 109535 46563931 ~ 46564202 (-)
G18519 fam19a1,LOC101163164,LOC100708151,LOC106903422,LOC107729407,LOC101482978 non-coding upstream 720250 47174646 ~ 47308372 (-)
G18529 NA non-coding upstream 933502 47387898 ~ 47388821 (-)
G18533 suclg2,LOC106583035 non-coding upstream 971851 47426247 ~ 47428085 (-)
AMCG00017105 srgap3 other downstream 1278932 45118290 ~ 45161137 (-)
AMCG00017091 brk1,BRK1,LOC106565571 other downstream 1783164 44653455 ~ 44656905 (-)
AMCG00017067 sumf1 other downstream 2780467 43633770 ~ 43659602 (-)
AMCG00017060 NA other downstream 3131443 43305697 ~ 43308626 (-)
AMCG00017061 NA other downstream 3153466 43280237 ~ 43286603 (-)
AMCG00017158 NA other upstream 2034731 48489127 ~ 48494407 (-)
AMCG00017178 NA other upstream 3032801 49487197 ~ 49494144 (-)
AMCG00017232 NA other upstream 4729835 51184231 ~ 51212373 (-)
AMCG00017234 LOC100690894,LOC102799047,LOC102206238 other upstream 4976291 51430687 ~ 51435239 (-)
G19335 NA other upstream 4991191 51445587 ~ 51449786 (-)

Expression


Co-expression Network