G18462


Basic Information

Item Value
gene id G18462
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 46918346 ~ 46920546 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU22897
CTTTAATAGTCCTGTCATGAAATTGTTTCCACATTCAATTTCAATGAATACATGTTATCACTGATCCATATCTGACAGTAATAAGGATCACACACAGGTCACAGCTGTAGTCAGCAGTGACagtattaattacattacagtacCAAGCATATCAGCAAGAGGCAGTATTTTAATGTCACTTTGTCAAGAAGTAACAGGCTTAAATTTGCTATctcttaaaataaaaggcatctcCCCAGTGCATCATTTGTTTCAAGAAACATCCCTGTAAGTGCAGGTCTTTTTGTGCTTTACCTTCCGGCATGTCGTCAGATTGCtatgatattaaaattattgctttgtattttgagTAACAAATGAaacacatgtaaataaatattttccattgcaTTGCATACTTCGACTTATGTCACTAAGATTTGGCAAAAACATTTGGCAGTCCATTCTATATCACATTCAAACAGAagaagaacaggaagtgggactGAACATTCTGGTATAAACAGTTTTAAGGCTATGTTTGAACATTAAGCCAATATGCCAATGTCATGTGTTTGGTAGCAACCGCTTATATTGCATCATAGGCACATATTGACTCTTAAGTGGGAGATAATCAGCAGGGCTATTGCTGAGAATATTCAGAATGACAGCAAGTGACGTTGAACAGTTCTTTGCATTAAGATTTTACATTAAGAAAAATTCTTATATTATGATCCAAAGCTGTGCTGTCCCTTTCTCATGCCACCCCGGTATTTGAAACAGCCTCTATACTGCTATACTGCGCAGAGCTGATATCAGCTTAAAACATCCTGTCAATGAGCAGTTTTGCATATGGAGACTGCATTCATCAATTTGGTATTCTTCCCAGCTGTAGCATGTATctcaaatacatacaatacacaaaCCCAAATCTTTACACTGAAAACACCCTTTGCTCTTCAGTCAATGCAAGTCCATAAAGATCTACTTTTGAAGTTTAAGGCACTTCATTCTGAACACACACTCCTCTGCcacttttaatacaatattagtacactttttgaaaagtaaaataaaacttcaaCCTTATTCTTAACACCATATCTTCGTAAAACACTTAGGcacaatatattgaaatacaattataattgcATAGTTCTACACTGAAGTAGATAATGCATTGAAACGACTGATACAACAATGTTGTATGGTAAAAACACTAATATTAAGTATCAGTTATTTGAAGAAACAGTTACCTTATTTTCACATGTTGCAATGCAGAGCTAATCAATATCTAATATCTTAAACAGTTACTGTCATAAAGGCATACTTTTAAGTACTTATAAGTACTCTGCTACAGTTGTACATGTTTAACAGtagaaatataacaataaagcCATATGTGAGTTATATATTTAACTACAATCAGtcatacaatacaatgtatCTTTATAAATTCTAAATAACATTGTTAGAATATACAAAACATTGGTTATCATACCAAAATGTCCATCCTTGAATTTAGACCTCCTTCCAGTGTTCATTAACAAAGGAAAtatcttacatttaaaaaaaagcacaaaaaccaCAACAGTCTCACTATATTCCGTATCATGTTCAATATAAACATTCTTACAATTCAAAAATATCCTGAATATAACTGTCAAAAACTCAGGAAGGGCATGCAAATCAGATGAttgtgcaaacaaaacaaaataatttaaatattaggaaaagtacattaaaatataagcCCAcataccttttttcttttctttttggagcaaagaaagttttaaatatacagtttctCAGTGATTACTGAATCATTGTAATGGTAAAGATTAAATAACAAATTCCTTGAAATAATCTGCAACAGCAAAAATACAGGAGTTGGGAAATAGGGGAATCAAGCCATAGACATACTTTAACACTAAATAGAACCAGCCAAATGAGTTCTCCCTGAAGCAATACAAAGGCTCGGAAGCTGTACTAGGTAGGAATGAGATGCAATGCTGATAGGACTGCAGATGGAGAAAAAGTGTTGAGGAATACTTGCTTTTTAGATCTCTAGACATTGATCAATACTACATAAAAGACACAAAGTTAACattaacaattattaatgtACAAGCTGCTGTTGTCtgatctttaattaaaaaagataatattGAATTATCATACAAATCATGGGTACACACATATGCACTAATATTATCACT

Function

GO: NA

KEGG:

id description
ko00010 Glycolysis / Gluconeogenesis

RNA

RNA id representative length rna type GC content exon number start site end site
TU22897 True 2201 lncRNA 0.33 1 46918346 46920546

Neighbor

gene id symbol gene type direction distance location
AMCG00017124 NA coding upstream 25879 46853928 ~ 46892467 (+)
AMCG00017123 NA coding upstream 109680 46772475 ~ 46808666 (+)
AMCG00017118 eif4e3,LOC107727004,LOC107681400,LOC107666244,LOC107568047,LOC107705706 coding upstream 296569 46610716 ~ 46621777 (+)
AMCG00017119 NA coding upstream 317629 46599760 ~ 46600717 (+)
AMCG00017117 rybp,rybpb,LOC107599415,LOC107732045,LOC107680715 coding upstream 409810 46506327 ~ 46508536 (+)
AMCG00017131 NA coding downstream 86589 47007135 ~ 47036741 (+)
AMCG00017127 lmod3,LOC102786770 coding downstream 120331 47040877 ~ 47044679 (+)
AMCG00017130 uba3,LOC108435248 coding downstream 131852 47052398 ~ 47060586 (+)
AMCG00017128 NA coding downstream 141281 47061827 ~ 47072175 (+)
AMCG00017129 LOC107655985 coding downstream 152173 47072719 ~ 47083518 (+)
G18430 gpr27,LOC106582853,LOC107713489,LOC107599437,LOC106565734 non-coding upstream 309964 46605530 ~ 46608382 (+)
G18420 NA non-coding upstream 354144 46563970 ~ 46564202 (+)
G18386 NA non-coding upstream 545940 46371967 ~ 46372406 (+)
G18365 NA non-coding upstream 811828 46105597 ~ 46106518 (+)
G18363 NA non-coding upstream 816723 46101066 ~ 46101623 (+)
G18464 NA non-coding downstream 10035 46930581 ~ 46930895 (+)
G18470 NA non-coding downstream 108241 47028787 ~ 47038523 (+)
G18538 NA non-coding downstream 558432 47478978 ~ 47479256 (+)
G18582 NA non-coding downstream 933846 47854392 ~ 47854658 (+)
G18607 NA non-coding downstream 1141853 48062399 ~ 48065018 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other upstream 1956745 44949034 ~ 44961601 (+)
G18192 NA other upstream 2262248 44654652 ~ 44656098 (+)
AMCG00017078 LOC106565757 other upstream 2780415 44126214 ~ 44137931 (+)
G17697 NA other upstream 4520559 42391297 ~ 42397787 (+)
AMCG00016979 NA other upstream 7663856 39239073 ~ 39254490 (+)
AMCG00017167 NA other downstream 2451476 49372022 ~ 49382218 (+)
AMCG00017173 NA other downstream 2481985 49402531 ~ 49403845 (+)
AMCG00017183 NA other downstream 2792921 49713467 ~ 49727567 (+)
G19113 NA other downstream 3631334 50551880 ~ 50552985 (+)
G19114 raf1,LOC108276324 other downstream 3638904 50559450 ~ 50563278 (+)

Expression


Co-expression Network