G18470


Basic Information

Item Value
gene id G18470
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 47028787 ~ 47038523 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU22914
tttagaaTCATAGTAATTAGGAATGAGTAGTTTCCTGTTGTTTTGTCCCTCTGAggcaaaatgtattctgaacaCTACTGAAGATTATTGAACACTATTATTCATTATTGGGAAACATTAATATTGAtagtttcatttgaaaaaaaaaaaaaaaaaaaNAAAGGTAGGTACTGCAAGAATTTCAGGACCCTGTTTAAATGAAGGATTGACAATAACTGGAAATAGACATTTTGTACAGTTGTTGATCTTGTGGTTATAAGAGCTAAAGGACCTCATTTAAAACTCAAAATGAATGTTAATATAATCTTTTCTATAGCTACTGAGCTGAAattggtattttttattttggtgataactggttttgtgtgtgtactacaGATGCAcgcacattttaaaaagaaatcttCATTAATCAAAGTGTCATTAACAGGACTAATACACGGTCAATGAATGGTTACCTCAGTTTTACAAACAGTAGCAAAAAAAtcatttctgttcttttccATGCTTTTACAAAtcattgtttatataaaatgcatcttCTGCATCTGTTATGTTGAACCTTCTATTGCAGACTAGttataacaaatacaatcagGAACATTTGCAAGATTTCTGCATAATCACAACAGCAGTGAAACTGAAACTCCTTCAGTTGAAGACTGTTCAAATGGATAACAAGTTGTGCTTTGCCTCAACGAAGCACTGCACCTTTGTCATCATTTTATTCCACTTTTCCTTTTCCGTTTCTTCATTTTCCTTGTTATTGCAGTAAGATGAGGAAAGCATTGAAGTGTAAATCCACTCCCTGTGCTTGTCCAAATTAAATTGCTCATGAGGGCTACACTACCTCCTATTTTGCATAAACACTTCATTCATCCTTTccttatttatcttttaacCTTCAACTGGACATTGTGTTTCTGTGGTTTATGAATGATGTTGACAttttaacaaagcaaaaaattccctgtttttatttttttattttattttaaactgctatTGCATCCCATGCTGGAATCCATGGACCAGGTGCTCTGTTTCCTTAGAAGAGAAGGAATTTGTATCTTCatgttaatattgtatatagaatgtatttggttttcatttttgtgagcatttttattgttttgaaaagcatgtAATATATAGTTCACAATCTCATTTGGTAAGCTGGTTCttagttatttgtattaaaatacatttggattCAAAAAAGGGAACTTCAAAAGAATATGcctttaatttattcttttgcatatttgtaCAGAATCCTTGTAAACCACACTTTCTTGTCTGCTCTTACTAGTCGTTCTATATTACCTGTTCTAAAACGGGgtgtcaataaaaaaaaaaaaaggtgtgaaAAACTTTGTCATGTGTGCATGaaaactgcagttttgttttttgatttgtctttacaattttaaacatcCAATGATAGTTTTTCCACCCGAGCAAATAATGTAGCTGAGCTGACTGGGTTCCTGTTGCAACATGCTTGGGGTGTCAATGCG

Function

NR:

description
PREDICTED: protein NLRC3-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU22914 True 1520 lncRNA 0.32 2 47028787 47038523

Neighbor

gene id symbol gene type direction distance location
AMCG00017124 NA coding upstream 136320 46853928 ~ 46892467 (+)
AMCG00017123 NA coding upstream 220121 46772475 ~ 46808666 (+)
AMCG00017118 eif4e3,LOC107727004,LOC107681400,LOC107666244,LOC107568047,LOC107705706 coding upstream 407010 46610716 ~ 46621777 (+)
AMCG00017119 NA coding upstream 428070 46599760 ~ 46600717 (+)
AMCG00017117 rybp,rybpb,LOC107599415,LOC107732045,LOC107680715 coding upstream 520251 46506327 ~ 46508536 (+)
AMCG00017127 lmod3,LOC102786770 coding downstream 2354 47040877 ~ 47044679 (+)
AMCG00017130 uba3,LOC108435248 coding downstream 13875 47052398 ~ 47060586 (+)
AMCG00017128 NA coding downstream 23304 47061827 ~ 47072175 (+)
AMCG00017129 LOC107655985 coding downstream 34196 47072719 ~ 47083518 (+)
AMCG00017133 NA coding downstream 51846 47090369 ~ 47164242 (+)
G18464 NA non-coding upstream 97892 46930581 ~ 46930895 (+)
G18462 NA non-coding upstream 108241 46918346 ~ 46920546 (+)
G18430 gpr27,LOC106582853,LOC107713489,LOC107599437,LOC106565734 non-coding upstream 420405 46605530 ~ 46608382 (+)
G18420 NA non-coding upstream 464585 46563970 ~ 46564202 (+)
G18386 NA non-coding upstream 656381 46371967 ~ 46372406 (+)
G18538 NA non-coding downstream 440455 47478978 ~ 47479256 (+)
G18582 NA non-coding downstream 815869 47854392 ~ 47854658 (+)
G18607 NA non-coding downstream 1023876 48062399 ~ 48065018 (+)
G18722 NA non-coding downstream 1283740 48322263 ~ 48326805 (+)
G18791 NA non-coding downstream 2168285 49206808 ~ 49211256 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other upstream 2067186 44949034 ~ 44961601 (+)
G18192 NA other upstream 2372689 44654652 ~ 44656098 (+)
AMCG00017078 LOC106565757 other upstream 2890856 44126214 ~ 44137931 (+)
G17697 NA other upstream 4631000 42391297 ~ 42397787 (+)
AMCG00016979 NA other upstream 7774297 39239073 ~ 39254490 (+)
AMCG00017167 NA other downstream 2333499 49372022 ~ 49382218 (+)
AMCG00017173 NA other downstream 2364008 49402531 ~ 49403845 (+)
AMCG00017183 NA other downstream 2674944 49713467 ~ 49727567 (+)
G19113 NA other downstream 3513357 50551880 ~ 50552985 (+)
G19114 raf1,LOC108276324 other downstream 3520927 50559450 ~ 50563278 (+)

Expression


Co-expression Network