G18519 (fam19a1,LOC101163164,LOC100708151,LOC106903422,LOC107729407,LOC101482978)


Basic Information

Item Value
gene id G18519
gene name fam19a1,LOC101163164,LOC100708151,LOC106903422,LOC107729407,LOC101482978
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 47174646 ~ 47308372 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU22974
GGGTTAATAACTAAGCTTCATTATACAATGTAGTTGCTCTGTAATAGTGGGCAGTCTAGCTTTAAGACATGTGATACCTCTCCAGTACGGCtgtattgaaatacacacactaCTTAGTACATTCTAAAGGAGATAGAGCTTGTGCTTAAAGCAGCTTTTCAATGGGAGGAATGAACTGAGGGGAGGCAGATCTGTCATTAAACAGGGATTGATCCTCGTCTTTAAGTAAATGTGAAGCTGCAAATTAACTCAAGATCACTTCAAGGGTCCCCTCCAGTAAAAGGGTGACGCTGTAAGATGATTTAAAGGTGAAATGACAAGGTTTCCACCCCTTAAATCCTGGCTACTTTCTGACAGTGCATCTCAGCCCTGAGATTTCATTCATTCTGCACGCAGGATTGGAGCTGAGCAGAGCAGGGGGACAAAAGAGTTTTTTTCCTAATCCTTGATTGTATAGATTATTTTAGGAATTTATCGGAATCCCTGCCGTGGAATGGATGGATTTAAGACAATGTGTTAAATCTTTTGGATGAACACTAATAGGGCTCTTTGCTGCTGGCTGGATTACTCAGaattGCCCTGCAATGTCCTGGTTCCTGTGTATGTGGATTAGTGCCAGTGCCATGCTGCTCTGTCAAGCGACTCTTTATGACACCATACAGCAGCACCACCTGCCTCGACCAGGTAGGAACGCCATCCAGATACTAGCTTCCATAGTCATTGGGAAATGGTGGTGTGAGATGGAGCCCTGCCTGGAAGGAGAGGAGTGCAAGACATTACCTGACAATTCAGGGTGGATGTGCTCTTCTGGAAACAAAATCAAGACCACAAGGattCATCCAAGGACCTAACAAACCGTTTTCTTAAAGAACTGTAGATGGACTACTTGATAAGATGGATAAAACTATTACAACAAGCAGGCCAGCCTGGATTATTTGTTGCACAAGGTGATCTAAAGGATATTTTttgagtgagagaaaaaaaaaatacaaatgaagacTGTTCAGAAGACAACTGGTGCCAAGGATTTAAAACTACAAAGTACTCATTTGGGTGATGGATCTTGAACTGGCAATTTCATTTCATGATAGTGGCATTTAGAGATCTTGTGTGGCATTTGCAGTATGGAgacattgtttttccttttaaaaaaaaaaaactaaaaaaaaaaaaacacaacaacatcaacCAAGAGTTATTTTGAGGATGTACAAGCATACCTTATGTGGAAGACATATGACTGGGTTTTTCAATTCAGAGACACTCTGACATGAAAATGGATCAGTTGTACTGGATCATACCAGTTTCCTCTTCAGGAAGAAGCTATGGAAATCCATTTTCTAATATCCCCTTCCCACCCTAAAATCGCACCCCTACCCCTCCATCATCATGCTACATCAGCATGCTGGCTTTGTGCAAATCATCAATGCATTACAAAAGCTCTAATGTCTGCTTAAGATgatttgggggaaaaataataattaaaatagtaaaaagttaaatgttgcTTTAGAATCAAGAACACGGTGGGCAACAGTGCCAGTAACCTTGACGATGTCAGTTTATCTTCAGTTATTTGTTGGCATGGTCTATGTATTTCATGGGAGATctctttgtattaaaatattctgtatataAAATTTCAAAAAACTTCATACAAGTCATGTGGTTCACAAGGAGATACAAGAATCTCAACAACACCCCGATGGACAACATGTTTCATTCAAAGCCTCAGATTTATCTATTAATCAGCGCTGGATCCATATTGAAGGTTGTGAGTGGGATTTCTTCTGTTTGTATTGGACAGTTTGCAGTCATTATTTTTGCCCAGAGCAGCTTTAAAACGGCAACTGGATATAACTCTAGCTCTTGTTTGTTGACAAGTGAAGTGTTTTAACACCAGTGGGGTTTCTTTTCCACGCTGTAGTATCTGTGGACATAAAACACTGCTGAGATAAATCtcaaaaaacacagcagcatTCTAGACAATTCTTTCATTGTAAACAAGACTGCAGAGAAAGTGGGACCCTTCTcagaaatcaaattaattttttattttccttttttaagagTTTGACAGAAGATGTTAACTCAgcattatgtttgtttgtagaTTTCGCTTACATAAAACTGAGATGAAAAACTGGcagttaaaaatgaatatggattaaaaaaacagccaacATCTACAGACAACCCCATTAGATATACAGCCTTatcagaataaaacattttttgtatacaAATGTTACTGTCCTTCTATTCTTTTATACATAGAAGTAGTTTGTTGTACTCGCTGCCATCAAAACTTAAAACATGACCATATTCCAAAGCATTTAGATACAATACCAGTCAATAAAGTCACCTAATTACAGTCACTTCTACAATAAAACTTAGTTTACATGCTTTTATTACTCCCAtgacttttaatgttttcattgatCCGTTTTAACTTCTTTTAACACTTCTCTACAGATTAACTTTGATTGTATCAAGTTAATTAGAActgaagtgtttttaaaatcactCGCATATGCCAGTGAGCATGAAAAATGTTGAGTGGGCACAATAAATCCACAAGTCTGTGAACATTTTTAACTGATCCCAGATAAATCTGAGTTCCAGACAGAAAGCAACGTTCTAACATACTGGTAAGtggggctgctgtgtgtgtgtg
>TU22976
AGAAGGAGGTACGTGTGAAGTTATTGCGGCACACAGGTGTTGTAACAAGAATCGAATTGAGGAAAGGTCACAAACAGTAAAGTGCTCCTGTCTACCCGGGAAAGTAGCTGGAACGACGAGAAACAAACCTTCCTGTGTCGATGCTTCCATAGTCATTGGGAAATGGTGGTGTGAGATGGAGCCCTGCCTGGAAGGAGAGGAGTGCAAGACATTACCTGACAATTCAGGGTGGATGTGCTCTTCTGGAAACAAAATCAAGACCACAAGGaataCCCAGCCGTATTCATCTTTTTAGCTCCAGAGGAAAAGCACTGAAGACCTTAAATCACACAAAATTGAGAAGGAGCATCACATTTGTTTCATAAAAGAAAGGGAACTTCCTTGCCTATTTCACCAGACAAGGGCAAGCATAATTTTGAGATGTCCCAGTGAACTCAGCTGATACCTTCTATCAAAAGCCCATCCAAGATCTTCACGATCTTCTTCAGTGGCTAAATAGATTATTTTCATACCCTCTTTAATCATAGCTAAACACTCATATCCCATGTCCAATCCCTAGTGCTATTcacaataaatgtacattgttaTTTTCTAGACAGTGAAAAATCAGTTTCATTAACAGGAATTCAAATAATCAGCCCCAATGGGCTCACCTGCCAACAAAGATTCGAATACAGTGCCTGAAAAAGCAGTGGGCTGAAAGATAACGCAGTCAAAAACATTGAACAACCATTTTGATTctttaaagggggaaaaaactacagaaaaaacagttaaaatgtctGGTGACTGTGTTTTTTCATGAATACAAATAgcaaacaaatgttattattcaattatgtcACTGAAAAGGACAAAAAATAGTACAGGCAATGGGAGATCGCCAAGTTTTTCTAACAAGCAGCTGTATATTTTTGAAGTTGGACACAAAAAGAGACAGGATTTAACAGTATATCAATGTAGTGTTATTAGAATCCATGTCTGTAGGTTTCAGAAGAACATACAGTCTTAGATATGTGCTTTAATGTTTCAAGAGCCATATGTTTTCTATAAAGAAAACAGAAGGTGCTTTATAATGCCCAAACATGCCATGAATATACCCTAAGTAAAAATACCATCTGCTATTGGCTTTCAGAGCAAAACAGTATtacaatacattcattaaataacatgtgctgttattacaataaaatgataTCATAACACAAATTTAATAGaatgaattatgcatttttttaaagaggacATGTTACCTATTGCAGGACAGTAAACAGTTTACTTTTCTTCATGTAAACTActtgcatttaataaatgttgctGCATTTTTTGTCTGGACTTTTCTTTACACTGAAGGAATGGAATTAATGTCTGAGTGACAAACACAATCAGAGGAATCCACTAATTTAACATTGGTGCATTCATATGTTCATATGTAATACGAACACATTGGAATGATATGAAAAACATGGAAATATTTGCAGGAAGGAACAGTGGAGGATTTATGTGGCCATCATGTTGATTGTGTATTTCTATTTCATTAGAAGTCAGCAATCTTGTTTGTGaaattatatcaattaaaacaatagttGCGGATTTGAAAAGCATTTGCTGCATTTCTTTAGGAAATCTTCCAATTCAATTTCAGATTACGTTTCTGTGACAACAATAAATAacttgaacaaaaaaaaacagaatctgAGAATCATTTGTGCTATTCCTTTTTCCTTTGATAGCTCTTAAAAGCAAATTATCAACATTGATCTTTAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU22974 True 2677 lncRNA 0.38 4 47174646 47308372
TU22976 False 1767 lncRNA 0.35 4 47178048 47196175

Neighbor

gene id symbol gene type direction distance location
AMCG00017132 NA coding downstream 123240 47047273 ~ 47051406 (-)
AMCG00017125 NA coding downstream 243836 46918360 ~ 46930810 (-)
AMCG00017126 LOC106907125,LOC106941653,LOC107666963 coding downstream 258568 46906493 ~ 46916078 (-)
AMCG00017122 NA coding downstream 567202 46483937 ~ 46607444 (-)
AMCG00017115 NA coding downstream 771345 46386418 ~ 46403301 (-)
AMCG00017137 NA coding upstream 214410 47522782 ~ 47541031 (-)
AMCG00017136 kbtbd8,LOC107600285,LOC107753780,LOC107557775,LOC107729395,LOC107699793 coding upstream 233721 47542093 ~ 47550598 (-)
AMCG00017139 slc25a26 coding upstream 361389 47669761 ~ 47722260 (-)
AMCG00017141 LOC105912243 coding upstream 657155 47965527 ~ 47966591 (-)
AMCG00017146 NA coding upstream 840382 48148754 ~ 48158397 (-)
G18421 NA non-coding downstream 610444 46563931 ~ 46564202 (-)
G18419 NA non-coding downstream 611073 46563094 ~ 46563573 (-)
G18405 NA non-coding downstream 720250 46440069 ~ 46454396 (-)
G18366 NA non-coding downstream 1068053 46102262 ~ 46106593 (-)
G18364 NA non-coding downstream 1072458 46101960 ~ 46102188 (-)
G18529 NA non-coding upstream 79526 47387898 ~ 47388821 (-)
G18533 suclg2,LOC106583035 non-coding upstream 117875 47426247 ~ 47428085 (-)
G18559 NA non-coding upstream 318891 47627263 ~ 47627521 (-)
G18651 NA non-coding upstream 745836 48054208 ~ 48054622 (-)
G18652 NA non-coding upstream 753940 48062312 ~ 48065039 (-)
AMCG00017105 srgap3 other downstream 2013509 45118290 ~ 45161137 (-)
AMCG00017091 brk1,BRK1,LOC106565571 other downstream 2517741 44653455 ~ 44656905 (-)
AMCG00017067 sumf1 other downstream 3515044 43633770 ~ 43659602 (-)
AMCG00017060 NA other downstream 3866020 43305697 ~ 43308626 (-)
AMCG00017061 NA other downstream 3888043 43280237 ~ 43286603 (-)
AMCG00017158 NA other upstream 1180755 48489127 ~ 48494407 (-)
AMCG00017178 NA other upstream 2178825 49487197 ~ 49494144 (-)
AMCG00017232 NA other upstream 3875859 51184231 ~ 51212373 (-)
AMCG00017234 LOC100690894,LOC102799047,LOC102206238 other upstream 4122315 51430687 ~ 51435239 (-)
G19335 NA other upstream 4137215 51445587 ~ 51449786 (-)

Expression


Co-expression Network