G18538


Basic Information

Item Value
gene id G18538
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 47478978 ~ 47479256 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU23000
CTAGAAAACATGCCGACAGGAGAGAAGCCCAGTTCTATTCACACTGAAGCAAGGTCGAGAAAAGAGCAGTTTTACGGAGCTAGGAGGAATTCAGCACACATTCAGAGATACTGTGCGTCTTACATGAAAAGCAATATTGTGGAATATCTACTGAGAACATCGGGCAAAATCACAGGAATTAGTTTTAATGCTTAGAAGCATCTACACAGAATGTATTTGCTTATTGTGGGGACTGAtattgtttaatacattatttgatttcttgAAATTGCACAGGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU23000 True 279 lncRNA 0.38 1 47478978 47479256

Neighbor

gene id symbol gene type direction distance location
AMCG00017135 suclg2,LOC106565836 coding upstream 5149 47465171 ~ 47473829 (+)
AMCG00017134 suclg2 coding upstream 50355 47387184 ~ 47428623 (+)
AMCG00017133 NA coding upstream 314736 47090369 ~ 47164242 (+)
AMCG00017129 LOC107655985 coding upstream 395460 47072719 ~ 47083518 (+)
AMCG00017128 NA coding upstream 406803 47061827 ~ 47072175 (+)
AMCG00017138 NA coding downstream 149860 47629116 ~ 47685872 (+)
AMCG00017140 magi1,magi1b,LOC107728617,LOC107553826 coding downstream 424426 47903682 ~ 47950784 (+)
AMCG00017142 NA coding downstream 532756 48012012 ~ 48062227 (+)
AMCG00017143 NA coding downstream 654362 48133618 ~ 48143478 (+)
AMCG00017144 psmd6 coding downstream 691040 48170296 ~ 48173353 (+)
G18470 NA non-coding upstream 440455 47028787 ~ 47038523 (+)
G18464 NA non-coding upstream 548083 46930581 ~ 46930895 (+)
G18462 NA non-coding upstream 558432 46918346 ~ 46920546 (+)
G18430 gpr27,LOC106582853,LOC107713489,LOC107599437,LOC106565734 non-coding upstream 870596 46605530 ~ 46608382 (+)
G18420 NA non-coding upstream 914776 46563970 ~ 46564202 (+)
G18582 NA non-coding downstream 375136 47854392 ~ 47854658 (+)
G18607 NA non-coding downstream 583143 48062399 ~ 48065018 (+)
G18722 NA non-coding downstream 843007 48322263 ~ 48326805 (+)
G18791 NA non-coding downstream 1727552 49206808 ~ 49211256 (+)
G18865 NA non-coding downstream 1957008 49436264 ~ 49493349 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other upstream 2517377 44949034 ~ 44961601 (+)
G18192 NA other upstream 2822880 44654652 ~ 44656098 (+)
AMCG00017078 LOC106565757 other upstream 3341047 44126214 ~ 44137931 (+)
G17697 NA other upstream 5081191 42391297 ~ 42397787 (+)
AMCG00016979 NA other upstream 8224488 39239073 ~ 39254490 (+)
AMCG00017167 NA other downstream 1892766 49372022 ~ 49382218 (+)
AMCG00017173 NA other downstream 1923275 49402531 ~ 49403845 (+)
AMCG00017183 NA other downstream 2234211 49713467 ~ 49727567 (+)
G19113 NA other downstream 3072624 50551880 ~ 50552985 (+)
G19114 raf1,LOC108276324 other downstream 3080194 50559450 ~ 50563278 (+)

Expression


Co-expression Network