G18607


Basic Information

Item Value
gene id G18607
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 48062399 ~ 48065018 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU23088
CAATTACCAAAGAGTACTGTTTgctgtgatttaatttattttgtatttttttatcatattaGGGATGCTCATTCAGGCTTTTCAGATGTACAGTTGATTTAATGAGctgcaaagcaaaacatttagcAGATCTTTGTACATTACACATAGGAATGGCTGCCCTCAAAGCAACATTGCACAGGCCCTCGTAGTACAGAAACAAATGGGGCGAGAGCCAAGGCTTGCATTTCTCAACTGGATTGCAGtggcaaatacaaacaaactactAGCAACCTGAATGTTTGGGTGTTTGAAAGATCACTTTAATGTTGCCTTTAATCTTCTGGAAAAGGATGAATATTAAAGCAAATCATGTACATGCCCCACTGTCACTGTCTGAAAGGTGGGGGATACATTTTTAGGGTCCATCCATTCTATCCACCAATCATCCGTTTAATTGTTATTGCtcgtatttttatttttagaaacattGCTGCCCTTGTCTGGCAATATGTTTTGGCAAAGATTTGGTTATGTTCCTATGGTTATTGTTTCCACAGCAACTGCTTTAGCAATTGTTCCTGTGggcaaaaaatacaaaccattCTTCTATTGTGAAAACCAAGATGTATTATGGTTTGGCCAAGACCTGGTTTGACCTGTAAACAAACATAATGCAGCCACTTTAACAATTCGTGTTCCCTTCTTCTGCTGCCTCATCtgttcgatttttttttttttcacgcaTATTTgacaggtgtttttttaaacgATGTGTGCATCTATGTGCAAACATATGGAAAAGCATGTGCTACCAGTCATTGATCTTCATGGGCTCCCGACAGTGAATGGATCCTACCACACAGCCGGAGAAATATTCTTCTGAGAACAAAAGATTAAGCTATACAttctaaaaatatgtatcaCATATACAATGTGTCATTCGTTATACATACAATGACAGAGTGTCTTTTTTTGGAATGTATTTGTTcggtttgtgttatttaaaacatatttaaggTACAATATAGGTGCTATATTGTTGACAGCCTCAacacaatgaacacatttaCTGTCAACTAAacgcaaaagaaaaataaatcttcataaTTGCACAATAAAGTAGGAAATACtccatatttctattttaatactAAAACCAGAAGACAGGTAGCAGAGGGGACAGTCTTGAGGGAGGGAGCTGAAAGGTGTGTGAAGTGTTCAAAGAGCCTTGAGGCTGGAGAGGTGAGAAGTGTCACACTCAGTTTCTTGGAAAATGAGGAACTGGCAGGTTGGTGAGATGAGAGCCTGTTGTCTGTCTTGGCGCAGGCTCAACTCTTTGAAGCATCTGAAGCTTTCGCCTTCACAAAATAGTCACGTTTCATTAATTGTTCTTTGGCTTCAGGAGATCATTAGGAGTGAGTGGACAATCACTTATCCCCCTACATTTGCAGTGTCCACCATATTGAATTGTACACTTtaagcagaaatgtattttattatgttattatgattgttttccctttttaaaaatgtaaatcatactAGAAAGTTATATTTTCTATTGTTTCAATAGATTAGTAAACCCATATTAGGAATATTCTTCTTtagatttgaaatgttttaaaagatgcaaacaacacacattttttattgtttcatgtATTACCTTAATCTCTTACGCTAtcttgcattttgttgttgttgtcatcattgcttttgaatatttgaattatacatCCTACTTTGACAGATTTGTCAGGAGTAAAGCACAGCAATTTTGGGTTTCCAtctagaaatatattttgatcatcgtttatatatataaaacttaattatattcAACGGTGGCAATttggaatgtttttttggtgtttgtcTTGTCTGGCGTgttgtaatgtatatatgtcgacagcacacacaaaacacttttttttttttcagagcaaGAATATTTAGggtttttttcaattatttgttttggggggttttcAGTTGACATTGCAGTTTACTGATAATGTGCtattttaaaccatattttaattttctgagTAGAGACTCTGGCAGAGAcgtttaaaaacacatatatatttattaaacttattTATCAGCTGTGTCCTTTTACCTAAGTTGTGAATATGTGatagttttaatgtatgttgCAAATCACGGTAGAATGAACAGCCGAGAGTATACTGTATGATGAAACTACAGGGAATTAAAACCCAAAGACAAACGCATACAGGACAAGCATTGAATGATATTGTGATATTATACTGTGTATTCTGGATATAAGAGAAAAAGTAGTTTATCTTCTATCCATTTTATTTAGCAGATTGTCCAGTTATTTTGCAAACTGTTGGTCTAAAGGGAATCTAACTTTTGAAGGGAACATTAGCAGATCTTTGCGTTGtagccattttattttgtgtgtatattctttaaactttttttttattgtaaaatgtgcCTCAATTGATGTCTGATTTGCTGCACTAAATAATGATATTGTCCTTTGGACACTTTAAAGGGATTGTACTGATCCTGCAGCTTATGGACTAAGAGCTGCTCAGGTTGTGAGAATGAAATAAAGGATCATATGGGAAATTGTAGcaacaaataaaatggagaatatattttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU23088 True 2620 lncRNA 0.34 1 48062399 48065018

Neighbor

gene id symbol gene type direction distance location
AMCG00017142 NA coding upstream 172 48012012 ~ 48062227 (+)
AMCG00017140 magi1,magi1b,LOC107728617,LOC107553826 coding upstream 111615 47903682 ~ 47950784 (+)
AMCG00017138 NA coding upstream 376527 47629116 ~ 47685872 (+)
AMCG00017135 suclg2,LOC106565836 coding upstream 588570 47465171 ~ 47473829 (+)
AMCG00017134 suclg2 coding upstream 633776 47387184 ~ 47428623 (+)
AMCG00017143 NA coding downstream 68600 48133618 ~ 48143478 (+)
AMCG00017144 psmd6 coding downstream 105278 48170296 ~ 48173353 (+)
AMCG00017147 thoc7 coding downstream 147635 48212653 ~ 48216163 (+)
AMCG00017154 NA coding downstream 287378 48352396 ~ 48352746 (+)
AMCG00017156 cadps,LOC106582941,LOC106565849 coding downstream 296330 48361348 ~ 48447697 (+)
G18582 NA non-coding upstream 207741 47854392 ~ 47854658 (+)
G18538 NA non-coding upstream 583143 47478978 ~ 47479256 (+)
G18470 NA non-coding upstream 1023876 47028787 ~ 47038523 (+)
G18464 NA non-coding upstream 1131504 46930581 ~ 46930895 (+)
G18462 NA non-coding upstream 1141853 46918346 ~ 46920546 (+)
G18722 NA non-coding downstream 257245 48322263 ~ 48326805 (+)
G18791 NA non-coding downstream 1141790 49206808 ~ 49211256 (+)
G18865 NA non-coding downstream 1371246 49436264 ~ 49493349 (+)
G18908 alas1,LOC106566237,LOC103399559 non-coding downstream 1517246 49582264 ~ 49670289 (+)
G18909 NA non-coding downstream 1608067 49673085 ~ 49673926 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other upstream 3100798 44949034 ~ 44961601 (+)
G18192 NA other upstream 3406301 44654652 ~ 44656098 (+)
AMCG00017078 LOC106565757 other upstream 3924468 44126214 ~ 44137931 (+)
G17697 NA other upstream 5664612 42391297 ~ 42397787 (+)
AMCG00016979 NA other upstream 8807909 39239073 ~ 39254490 (+)
AMCG00017167 NA other downstream 1307004 49372022 ~ 49382218 (+)
AMCG00017173 NA other downstream 1337513 49402531 ~ 49403845 (+)
AMCG00017183 NA other downstream 1648449 49713467 ~ 49727567 (+)
G19113 NA other downstream 2486862 50551880 ~ 50552985 (+)
G19114 raf1,LOC108276324 other downstream 2494432 50559450 ~ 50563278 (+)

Expression


Co-expression Network