G18709


Basic Information

Item Value
gene id G18709
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 48232690 ~ 48237413 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU23201
GCTCCTTATTACTGTGCTGCTTACAAGAAAAGGAATTCAATTTATTTGCCTTGTTACAGTACAACACATGCTTGTTTCAGACCAACTTGAAATACAGTTAGAGGATGGATAATGTTGATTTAGCAGTCTATAGCCTTCTGGAAACTTTTTACAAAAATTCCAGAAAAGAGGGACACGTTTTCAAACTGAACAGCGCTGAGCTCGCTGACTTGCTGCACAAGGAACTACCTTCCATAGTTCAGGACTCTTTGATGGATACGCTGACGTTGAATTTATCAGAtttgtaacaaaaaatacaaccacCAAaaaTGTTAAGCTGGAGACTAAGACCCCGGCTGAGAAAGCAATCGCTGTGTTGATCATGACTTTCCAGAAGTATGCTGGCAGTGAAGGAAACCCACTCGCTCTTGAAATGAAGGAGCTGAAAACATTGCTGAAGACAGAAATGCCCACATTAAACAAGATAAAAAGACCAAAGAAAAAGATCTCACAGAAGATTTGCTGGCCTAaactggaaaagagatgctgtagattgaaacaagtggaaacatcttggagggGCCATCCTCCAACAGGAGATCAACAAagcccctgctgctgctgctcataCAAGCAATTTAGTgtgaaaagcaattaaaacattttaacacaagATTACTTTAACAATCAattaatatcaaataatatttttgcacacaaaaaataggATTTAATAATGTCTCATCATTTTTGGGGGTTAAACATGAATGATTGGTTTGTTTCAACAGGatggacttaaaaaaaaacaaagcttgcTGAATGTTAACATTTCAGATGGACTACAGTTCAATTTCACTTTGTTATGTATAAGTATGTCTAAGACAGGCCATAGAATTGAGTTGAATAATTATAAGCATAgggcatttgtgtttgttaaaggAATGTGCAAGGAGACACCTCCGCAGTGGCACCAGGAAGATCTATATTGATTATACATGCTCTGTTCCTCAATTCTTtctaaaataaactattgtaGCTTAACTAATAAGACAGTAGTTTTGTTAGACGGAGAATATCTTGACATCGGCAGCTGCAGTAGATGTGTATTACATAACCTTTTATCTGTCACTCACAAAAGAATATCTCCAAGAACAAGTGTTTTGTGTTCTAGACATTACACAAAGGAAAAGCTATAAAAAGACAGAAAGTGTCATCTTTTCCCCCATCACATTTAAGATACCCTGTGATAAAAGAAACGACACAGTTGAATACACAGTTTGAGGGGTAACAGCTCTAACATTGGAAATCTCCTTGTGTGTGCCTTATGAAGTCTTTGGGAACAGGGTTTCCAACTGTGCTAGGATGTGCTCTGTGAATTGTATAATGGCCTGATTTCCCCATGTGCAAATTGTGTGTCAATGGCccatgtaatgtatttttttatggattGTGTAGTTTGCTCTGACTCACTAGCAATCAGAATCTCTTTAATCGCTGCctattaaatatgtgtattaattta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU23201 True 1501 lncRNA 0.37 4 48232690 48237413

Neighbor

gene id symbol gene type direction distance location
AMCG00017150 NA coding downstream 542 48225164 ~ 48232148 (-)
AMCG00017153 NA coding downstream 15231 48216639 ~ 48217459 (-)
AMCG00017149 LOC104952051 coding downstream 20204 48175212 ~ 48212486 (-)
AMCG00017145 NA coding downstream 63015 48160403 ~ 48169675 (-)
AMCG00017146 NA coding downstream 74293 48148754 ~ 48158397 (-)
AMCG00017152 NA coding upstream 2671 48240084 ~ 48241492 (-)
AMCG00017148 NA coding upstream 11941 48249354 ~ 48261026 (-)
AMCG00017151 NA coding upstream 86402 48323815 ~ 48345751 (-)
AMCG00017159 ptprg,LOC107592848 coding upstream 266505 48503918 ~ 48559435 (-)
AMCG00017160 LOC107752167 coding upstream 347063 48584476 ~ 48587639 (-)
G18702 NA non-coding downstream 8372 48224050 ~ 48224318 (-)
G18690 NA non-coding downstream 61580 48170158 ~ 48171110 (-)
G18652 NA non-coding downstream 167651 48062312 ~ 48065039 (-)
G18651 NA non-coding downstream 178068 48054208 ~ 48054622 (-)
G18559 NA non-coding downstream 605169 47627263 ~ 47627521 (-)
G18827 NA non-coding upstream 1123255 49360668 ~ 49360937 (-)
G18828 nek4,LOC106565859 non-coding upstream 1124247 49361660 ~ 49361926 (-)
G18829 NA non-coding upstream 1126336 49363749 ~ 49364302 (-)
G18830 NA non-coding upstream 1127793 49365206 ~ 49366441 (-)
G18831 NA non-coding upstream 1130068 49367481 ~ 49368062 (-)
AMCG00017105 srgap3 other downstream 3071553 45118290 ~ 45161137 (-)
AMCG00017091 brk1,BRK1,LOC106565571 other downstream 3575785 44653455 ~ 44656905 (-)
AMCG00017067 sumf1 other downstream 4573088 43633770 ~ 43659602 (-)
AMCG00017060 NA other downstream 4924064 43305697 ~ 43308626 (-)
AMCG00017061 NA other downstream 4946087 43280237 ~ 43286603 (-)
AMCG00017158 NA other upstream 251714 48489127 ~ 48494407 (-)
AMCG00017178 NA other upstream 1249784 49487197 ~ 49494144 (-)
AMCG00017232 NA other upstream 2946818 51184231 ~ 51212373 (-)
AMCG00017234 LOC100690894,LOC102799047,LOC102206238 other upstream 3193274 51430687 ~ 51435239 (-)
G19335 NA other upstream 3208174 51445587 ~ 51449786 (-)

Expression


Co-expression Network