G18722


Basic Information

Item Value
gene id G18722
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 48322263 ~ 48326805 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU23215
TCGTCATCAATGCATTCGACATTTCTAACCCTCTGTGTACATCATAAAACAATCTATATCATCCAATGTTTTGTCCTATGAAAACcaaaaagtagaaaaacaaacatgggtAAAACAGCCAAAAACAACCTTTAGGAAATTGGTTGTGCACGTAATTATATGTGGATAATTGAGAATTTGAATAGGCATTTTGAATACTGTCATTACATTGTGAGATTTGGTAATAAGGTGAATTATTAAATTGTCAAATACTCCATACCACAGGTTTTGAAAAGCTAGAATTAACCTAGATCCCCACACCCAACTCTGAGACAATCTTCATTCACGGCTTTATACAGGgcaaacaaataatttgtaacATTATGGTTCACCATCCTCCTGGACAATATTAGTTTCCCCTCTCAGAGCTTTTAAAAGCTCAGTAGCATCCTATAACAGTATCAAAATAAGCCAGGGCATTGCTTTAGGGGGAACCTTTAGAACAAATGGTTAAAAAGGAATTAATGAGGAAAAGCATGATTTCAATTCACTGACAAAACTGAACTTGGTAGATGACAAGATGACATGGTCATCTGCAGCAGTTTCCTGACTTGTTCATTTATAGTTTATAAAGCTTTATGAAGATGCctttttcacattaaaagtCTGCTAAAGTCCAATTTTTTTTATCCTTAactcaaaacacaaaatgagatGCATACTATTGTATATACCGTATTTGTAtacgtgtatgtatgtatacaacacacacacacctccctctctctctctctctctctcgatgtCTCAACATTTGTAGGTTCATTAAACGTTTTAGCTTTAACAAGGGCACATTTCTCTGcataacagaaaatgcatgaTCCTGAATGAAGACAGATTtctattaaattaagtattttatacTCACAACTTTAACCCTATCCAGAAGCATTTATATagtacacattatattttacacatacaCTATTCTTGTTGGTGTGGGAGAGAACAgatttaacaatttatttaatttcatatatacagataaaaacaatgttaacatttttacattaagaGGTAATTATGAGAAAAAAGGTTATGGGAAGACCAAATATACAATTGAAAAGATCAGTTAAAGGTTTAGATACTCATAGTCCAGCTTTTTGCCTGGTTGTCACACAACAATGTGACCTACAGAAAAGTGATATTTTAACGAGaaatatgtaacattaaaatgtacctGTAACAGGAAAACCTACTaggacaaaatacattttaaaccctgaattaaatgcattatatgaTTAAACATACTTTATAATATATTCCATCAAAGCTTTCCAATGCGACTACGGTATGCCTGTTCTGTAGATGCTTGAGCACTGGCTTTCAGCCATGCAGTAACCCAAAGGGCAATTTGCTATTTATATTAAGGCTGAAGGTCGAACCTGTGGCATCATATTCCAACCATGTTTAACAAGAATTTCACTATTTAGATCTCAATGACTAAAATAATGCACCtcttattctttgtttttactgGACCTTACATGTTAAGTAAGccgtattatatatatatatatatatatatatatatatacacacacacacacacacacattttaaaagatgtaaagcagaatacaaaataattccatTCAAGGTACAGTAGAtgcatcaaataataaaaacagtttaaacacaatggaagTGTAAAAATGCAGTTGTCAAAAAGACAGTGTAATCTTTATCCAACATATTTATTCAATACACAGCTCAGCTCCAACACGGTTCTACTAACCAAGTAGTTTTTGGTGATTTTTCCTCACTTTACAAATGTTCCGTCAATGCAATTTACTCATGTTTTTTGTATACatcattttatgttgttgtttctatatacaaatgaataaataacatggCCACAATACGTTTTTCCATgagacatttaaacaaaggGCAAAGAATTATAATGGCACCACAGCAAAATGTTACAATTCTGCTGCCTAGACATTGTGTCAAGAGTAcaaatactataaaataaattcaagaaTTGGATAAATCTTTATTTGTaccatacaaaatatgaattttctAAAACCCCGAAAAGAAACCATTTATTGCCTTCACCAAATGCATGCTAAAACATATATTACtgttataaaggaatatttacACAGAAGAAATCATAGATACCATTTTAGTATAATTTTGTGTATATCCATTAATGtggtattaatatataaagatttaaaaagagGTAGGGTCAAATGAATTATGTTCAAGGTGCATTAACATATTAGAGTTATATTTTatactaatttacatttttgcatgaCAACTAAAGCTGAAGAAATActagtcaaatacattgaaattaaaccTATCATATCCATCCTTAACACTAAACAGTTATTGGCAGTGAAGATTTTAACAATGTGGACCTGCCCTGTGGACTCATGCTGTCAGAAAGGGTCACACTTAAATTTGCAAAACATCATGAAACCCCAAAACGTGATTTCAGGAGAACTTCGTAAAACCCAAAAGCCAAAGCAAGAACAGAAGTTACGCTGTTCTGAGGGAAGCAACATCAACCAAAGAAAAGCTTTTCTCAGTCATTCGTATGTTCTTcatcaaaccaaacaaaactaaaacctgagcaaagtcaaacaaaaaaaaacccgcAGATTTAAGGCTAATTTAATAGTGAAAATCTCACAGATCAAATCATTTAATGATTTGAAAGTTTTTTAGTGCAACAAATGATGGAATGGCTAAACAATTGaaagtgggggtggggtgggggggtagctTCTATGGTACAGTACACGTGTGTGAACGATGAGCAGAGCTGAAATAAATAACGGATAAAAGTAGCAGGCAATACTGCTGGCTTGAAAAGTCTGTCAATTAAGAGACAAGCTGTGATCAAGTAATTTACTTAAAGGACTTATAAAATCTATCTTGATTGctgaaattgtatatattaaaaaagtgtgcATGCCTGGAGAAAGATTTATTATGCAGGAAGAGTGCTGGGTAGTACTCCGTCAATCAAATCTCAAACCCTTTACCCTCCTTTCCTCGCTCGTTTAATTCATCTTCACTGTAGATTTTCAAAGGCCAGTTTTAAAGCTCTGATGAAGTGGAATTGAAACCTTAGGCCAACAGATGGTCCATTTTGTGACTGTTGTCAATTTTGTACAGAGGGAGTCCTTTGACTAGACCTTCATTTTTAAACCTGTGCATCTCCTTTACCTGCGTCAATTACCACATTAAAGCAGGGAGGACACattaattgtttacattttaaaaattactgCATTActtatatgtattcatatataaagCTTAAAAACACTGAGTTGGTATTTATCAGGTTTGCTTAACAAAAGGGCAAAATACGATGACGTGGCACAAACTCTGCCTCTCCCACCTATCcttctaaagaaaaaaataaaattacacacaataaAGAAAGGTGTGGGGAGGTATATCAACTAAAAATCTCAGCGTAAGTGCCAAGTTCATGTCACGCTGAAAAACAGGATAAACTGtctataggtttattaaaaatagtgGGAGTCCTATATCGTAGTCTACTCACaagtatttatctttttaaaaatatatttacactagGAATTTAGATTGCAAATCCATTACGTATAAATTGATCATACTTACActattaaatttatttttaaatcaaactatccttttaaatacacttttgaGCACCAAAACCAAATTTAATGGACCCCTCTCTATGAAGTGTAATAACAGAACATCTAAAACAGTATATAGGAAAACAAACTCTTACTGTCAGATCAGTACAAAATGTCATGAAATGATGCATCTTACCTAAGATTCAAAATGGCAAAAAAGTAGAAACTGTATCGTATATATTCAATGGGTACTTTACATGGAATAGCAGAGTAAGCAATGGAGCAAATGTACTTACTTCAATAACAATGAACTGCGCTCGACGAGCTTACCGGAGGATTTGTGCAGAATGGATACAAGTAGggtgaaaatggatggatgcaCGTGTACACTATAGTGAACATAGCATTGATCCTTCAGGGTGGAAAGCTGCATGCCAGATCAGTAAAACCTTCATTTAGTATTATAgaattatcttttttcttttcttttttttttttttaaagaacttaCGTTCTCAATGTAAAAGTTGCtcagagaaatgtattttctctttaaaaatatcacacatTCTTCACAGAAGTTGTTCatactgtgaaaaacaaatattgtgtaATTAAGTTTAACTAAAGTATATTGTATAAAAAGATAGACTCATTGGTCCATGTTAGGCACTCTGGCACTTTGAACAACACATATTCAATGCATTCCATTCATGATGTGTTGTTTCTGATGTTCTTTTGCATTCAGATCATCTTCGTTGTGTTGCAAAAGGACCAGGTCTTCTTCCCATAACCTGGCATTCTTCCTGATCTCTTCCAGGGAGTATTCTTGCacaacatttccattttcaaaaactgtgACTAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU23215 True 4513 lncRNA 0.33 2 48322263 48326805

Neighbor

gene id symbol gene type direction distance location
AMCG00017147 thoc7 coding upstream 106100 48212653 ~ 48216163 (+)
AMCG00017144 psmd6 coding upstream 148910 48170296 ~ 48173353 (+)
AMCG00017143 NA coding upstream 178785 48133618 ~ 48143478 (+)
AMCG00017142 NA coding upstream 260036 48012012 ~ 48062227 (+)
AMCG00017140 magi1,magi1b,LOC107728617,LOC107553826 coding upstream 371479 47903682 ~ 47950784 (+)
AMCG00017154 NA coding downstream 25591 48352396 ~ 48352746 (+)
AMCG00017156 cadps,LOC106582941,LOC106565849 coding downstream 34543 48361348 ~ 48447697 (+)
AMCG00017155 LOC108271493 coding downstream 128690 48455495 ~ 48460635 (+)
AMCG00017157 NA coding downstream 148563 48475368 ~ 48476484 (+)
AMCG00017161 NA coding downstream 458363 48785168 ~ 49023630 (+)
G18607 NA non-coding upstream 257245 48062399 ~ 48065018 (+)
G18582 NA non-coding upstream 467605 47854392 ~ 47854658 (+)
G18538 NA non-coding upstream 843007 47478978 ~ 47479256 (+)
G18470 NA non-coding upstream 1283740 47028787 ~ 47038523 (+)
G18464 NA non-coding upstream 1391368 46930581 ~ 46930895 (+)
G18791 NA non-coding downstream 880003 49206808 ~ 49211256 (+)
G18865 NA non-coding downstream 1109459 49436264 ~ 49493349 (+)
G18908 alas1,LOC106566237,LOC103399559 non-coding downstream 1255459 49582264 ~ 49670289 (+)
G18909 NA non-coding downstream 1346280 49673085 ~ 49673926 (+)
G19040 NA non-coding downstream 1827553 50154358 ~ 50154694 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other upstream 3360662 44949034 ~ 44961601 (+)
G18192 NA other upstream 3666165 44654652 ~ 44656098 (+)
AMCG00017078 LOC106565757 other upstream 4184332 44126214 ~ 44137931 (+)
G17697 NA other upstream 5924476 42391297 ~ 42397787 (+)
AMCG00016979 NA other upstream 9067773 39239073 ~ 39254490 (+)
AMCG00017167 NA other downstream 1045217 49372022 ~ 49382218 (+)
AMCG00017173 NA other downstream 1075726 49402531 ~ 49403845 (+)
AMCG00017183 NA other downstream 1386662 49713467 ~ 49727567 (+)
G19113 NA other downstream 2225075 50551880 ~ 50552985 (+)
G19114 raf1,LOC108276324 other downstream 2232645 50559450 ~ 50563278 (+)

Expression


Co-expression Network