G18791


Basic Information

Item Value
gene id G18791
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 49206808 ~ 49211256 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU23309
AGAAAACCAGGAAGTAAAGTGGAGATGGCGTTGCAATATGGTGCTCAGGGATTTTGTAATGTGTATCTTCTTTTATGGTTATTATTTGATGACGTGGAGGGACACATAATACACAAGACACGTTTGCTAAGATATATGCGTAAAGAGCTGGTGGGAGAGAAAGACATTCTAACCGGAACCGTGTTTCCTGACGACGGTCCCTCACAGAAACCTGTTGCTGCACTTCAGGTGAATATCACCTGCTCGACCTAAACATGGCACAGCAAGGTTAGGCTCCACCCCGGGGTTATAATCGCTGTGGTGGTTGTTTCCTCCCTTGCAATCTTAGCTGCTTGCTTTATTATCAGAAAATATTGCTGCCTCCGCAGCAATGCAGCCTACAGGTACTCTGAACTAAGAGAGCAGGAGGAACAGCACACAGCCGATGAGCTAGACAACAGCTCTGCGGACAGAATGCTTTATAATGACGACTCTGATGAGGTGAGGCATTATTTGGCTAATCTGTTCCCTTGTTTAGGCAAAgtcacttaaaatgtaaatcagaaaATTAGAAATAAAGGGATTGTGAAGTTTGTCAGTACATTAGTATTGTAGTAAAATACCACAACTTAAATATCCGCCTGGCATTTAGATTACCTTTGAGACTCGTGGTGGTTTAGTCACAGAGAATGAATTAATGGCTTACAAGACAcggtttaaaatgttaataaataacattgacaactagcagaaataaacacaaggactttgattaacaaaatatagaCCTACAACAtcaaactttaaataataaatccttTTAAACTTTGGCCTGGATCAAATGAAGTCATTGATCAGCACGCCAAAGGGAATTCTGAACCCAGCGCTTGATGGCAGTTTTCTGTGGTGTCGACTCAAGGAGCCTCCGAGAATCAGAAAGCCATTAAGTGACATATTGGAATATGCAAATGACAGTTGGTGGAACATTGTTTTAATACGATTCTTTGTGAATGTGCCATAACACTATCACTACTACTTGAACTAAGAACATTTTATTCCTAGAAACTAGtttacattataattgtgtGGAGTTACTGGTACAAATTCTGAAACTTCAGTTAATGTATTCAGTGTACCTTCCATATGAGCTGTATTACTGGTGGCTTCaggtttagttatttatttattttctggtaaTAGAAAGTCTGACATCAAATGTttgatgttaaattaaataacttttctttttcccccccacagGATTTATTAGAATGAAACAATTCACTtcacttcagaaaacaaaacttaaaccccaccagaaagtatttttttttccaaagaacaAGATGATCTCAGGGATAAAGATGATTTAtgtaactatttaaatataatctaatttATAGTCAACAGAAATTAGTTCTGGAGCGTTTTTCTCTTGTGAATGACTTCTCATTTCACAATATTGATTGCCCCTAAGCTGAAACTTTTTTTCTAATTGCAATGGGTTAACAGTTTGATTTGtgatcaaaacacacacacattattggACAGCTCTTCTAAGCTTTAAATTGGAAACACAATTTGCACAATTTCtacataaaaatgtgtattactattattattattattattattattattgttattattatagcaggtttgtattttgtttaggcTCTTGACATCTCATTGTAGAAATGCAGTGCCCCTGCATGTGATTTAGTAAGACGTGAAGCAAATGTTGCTGCTGGCTCCAAGCTTATTAAATCTGGGTCAGTATCTTTATCAATTTCCcccaacaatatttttttgtactgcTCGTGCCTTTCATCACCGCTACTGTGTATATCAGCCACACAGGATATAGCTTTGTCTTTGAGCCTGTTTGTGTGTACTTCGTTATTTTTATAGCTTTGTACCTCATCAtttatctgtatgtgtgtgtttgtcttatttttaaacactctACAATATACAAGATACCTGATTCTGTATCTTAGTGTTTTCATGACATTGCTTGTTACATACCAATAACTAGGAAATAATACTTTGAATTTTGACATAAAATTATATTCTCTGAATTAACATAAATGACAAATGTTACATACTTGTACACAGCAAATTAGGTTGTTAATGGAATTAAGATTAAAACCATGTTTGCTGATAACATACAAAACCCTTCTTTATATAGCAAATTAAGAATAAACATTCCTAATTCCTAAAAAAATATGGTCATTTCATAAAGTTCCCACTTGAATGAGTGTCAAAGtctgaaatgaagaaagagCAATATGAATGTATTCTAGTcctaagaaaatgtatgtacacCACTGGATTTCGGTAGTGTGGAAAAACaccaaagtgaaaaatatatctttgtattttgcacaagtttattattgcacatttacaaaaactactaaacatatatatatgagaacTACTTCTGCAAATGTACATAAATagtaaatgtaatgaatacaaGCAATGGAGAATGAGGAATTTTAACAGACTTTAACTTGCACAGACAAGAGTGTCTTTAGCCATTACAGCTAAGACTTActacaatgtatatattgtttttcatatcctttttttctgtc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU23309 True 2582 lncRNA 0.34 3 49206808 49211256

Neighbor

gene id symbol gene type direction distance location
AMCG00017165 NA coding upstream 2666 49141599 ~ 49204142 (+)
AMCG00017161 NA coding upstream 183178 48785168 ~ 49023630 (+)
AMCG00017157 NA coding upstream 730324 48475368 ~ 48476484 (+)
AMCG00017155 LOC108271493 coding upstream 746173 48455495 ~ 48460635 (+)
AMCG00017156 cadps,LOC106582941,LOC106565849 coding upstream 759111 48361348 ~ 48447697 (+)
AMCG00017163 NA coding downstream 601 49211857 ~ 49221883 (+)
AMCG00017164 NA coding downstream 26646 49237902 ~ 49252687 (+)
AMCG00017162 LOC106565857,LOC105028386,LOC106583017,LOC105912203,LOC107706913 coding downstream 54205 49265461 ~ 49278686 (+)
AMCG00017166 NA coding downstream 149571 49360827 ~ 49368839 (+)
AMCG00017171 pbrm1,LOC107699352,LOC107744848 coding downstream 173355 49384611 ~ 49397912 (+)
G18722 NA non-coding upstream 880003 48322263 ~ 48326805 (+)
G18607 NA non-coding upstream 1141790 48062399 ~ 48065018 (+)
G18582 NA non-coding upstream 1352150 47854392 ~ 47854658 (+)
G18538 NA non-coding upstream 1727552 47478978 ~ 47479256 (+)
G18470 NA non-coding upstream 2168285 47028787 ~ 47038523 (+)
G18865 NA non-coding downstream 225008 49436264 ~ 49493349 (+)
G18908 alas1,LOC106566237,LOC103399559 non-coding downstream 371008 49582264 ~ 49670289 (+)
G18909 NA non-coding downstream 461829 49673085 ~ 49673926 (+)
G19040 NA non-coding downstream 943102 50154358 ~ 50154694 (+)
G19042 LOC103376870 non-coding downstream 944197 50155453 ~ 50155825 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other upstream 4245207 44949034 ~ 44961601 (+)
G18192 NA other upstream 4550710 44654652 ~ 44656098 (+)
AMCG00017078 LOC106565757 other upstream 5068877 44126214 ~ 44137931 (+)
G17697 NA other upstream 6809021 42391297 ~ 42397787 (+)
AMCG00016979 NA other upstream 9952318 39239073 ~ 39254490 (+)
AMCG00017167 NA other downstream 160766 49372022 ~ 49382218 (+)
AMCG00017173 NA other downstream 191275 49402531 ~ 49403845 (+)
AMCG00017183 NA other downstream 502211 49713467 ~ 49727567 (+)
G19113 NA other downstream 1340624 50551880 ~ 50552985 (+)
G19114 raf1,LOC108276324 other downstream 1348194 50559450 ~ 50563278 (+)

Expression


Co-expression Network