G18829


Basic Information

Item Value
gene id G18829
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 49363749 ~ 49364302 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU23367
CTTGAGCTCAGGTGTCTTATTTTGGGTGTCGATACTCTGAAGGAGTTTCATCGTGTCATCTTTTTCATCCATGTCAACAGGATGATTCAGTTTGTCTGAAGGCAGCTTTGTTTCGTTTGCTGGTTTCAGCTCCTTATGTAACTGAGAATCTCTATCTTCAGATCCATTCGAGACCCTCTTTGACTCTCCACTGGAACAGACATCCGAGAGCCTCTTTGAGCTCCGATCACGTGTCAGATGCTCCCCTTTCGTGGGGTTTCTTTCTTCACCAGGTTTGAGATCAATGTCAATGTTGCTAATGGTTGCTAAGGATGATCCTGTGTCATTCAGAAGCTCCTGACCACACGCTTGCTGGGGTGCTGCTTTTGGAGGAGGGTGTGCTTCAGAGACTGCATTGTTGGCTTTGTTCTGCcgtaaatgtatttcttctttctgtaaaaagacaaatgtgttttgtcaaACTGAAGGtaaacagacatttcaaatgAGCTCAAAACGCAACAAAAGGACTTCACATCAACAAACATGCATGGGAAGTAAATCCCTAATCTCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU23367 True 554 lncRNA 0.44 1 49363749 49364302

Neighbor

gene id symbol gene type direction distance location
AMCG00017168 LOC105028385,LOC106583015,LOC100136667 coding downstream 44830 49301962 ~ 49318919 (-)
AMCG00017160 LOC107752167 coding downstream 776110 48584476 ~ 48587639 (-)
AMCG00017159 ptprg,LOC107592848 coding downstream 804314 48503918 ~ 48559435 (-)
AMCG00017151 NA coding downstream 1017998 48323815 ~ 48345751 (-)
AMCG00017148 NA coding downstream 1102723 48249354 ~ 48261026 (-)
AMCG00017170 NA coding upstream 5274 49369576 ~ 49370958 (-)
AMCG00017169 NA coding upstream 12221 49376523 ~ 49383368 (-)
AMCG00017175 NA coding upstream 39820 49404122 ~ 49447336 (-)
AMCG00017174 nisch coding upstream 91192 49455494 ~ 49477304 (-)
AMCG00017177 dusp7,LOC107712495,LOC107677944 coding upstream 215287 49579589 ~ 49589402 (-)
G18828 nek4,LOC106565859 non-coding downstream 1823 49361660 ~ 49361926 (-)
G18827 NA non-coding downstream 2812 49360668 ~ 49360937 (-)
G18709 NA non-coding downstream 1126336 48232690 ~ 48237413 (-)
G18702 NA non-coding downstream 1139431 48224050 ~ 48224318 (-)
G18690 NA non-coding downstream 1192639 48170158 ~ 48171110 (-)
G18830 NA non-coding upstream 904 49365206 ~ 49366441 (-)
G18831 NA non-coding upstream 3179 49367481 ~ 49368062 (-)
G18832 NA non-coding upstream 4316 49368618 ~ 49369551 (-)
G18945 LOC105893506,LOC108431510,LOC106566656,LOC107586924,LOC107593103,LOC107704447 non-coding upstream 343364 49707666 ~ 49709260 (-)
G18961 NA non-coding upstream 360895 49725197 ~ 49725675 (-)
AMCG00017158 NA other downstream 869342 48489127 ~ 48494407 (-)
AMCG00017105 srgap3 other downstream 4202612 45118290 ~ 45161137 (-)
AMCG00017091 brk1,BRK1,LOC106565571 other downstream 4706844 44653455 ~ 44656905 (-)
AMCG00017067 sumf1 other downstream 5704147 43633770 ~ 43659602 (-)
AMCG00017060 NA other downstream 6055123 43305697 ~ 43308626 (-)
AMCG00017178 NA other upstream 122895 49487197 ~ 49494144 (-)
AMCG00017232 NA other upstream 1819929 51184231 ~ 51212373 (-)
AMCG00017234 LOC100690894,LOC102799047,LOC102206238 other upstream 2066385 51430687 ~ 51435239 (-)
G19335 NA other upstream 2081285 51445587 ~ 51449786 (-)
AMCG00017251 actr8 other upstream 2482294 51846596 ~ 51860267 (-)

Expression


Co-expression Network