G18908 (alas1,LOC106566237,LOC103399559)


Basic Information

Item Value
gene id G18908
gene name alas1,LOC106566237,LOC103399559
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 49582264 ~ 49670289 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU23467
tttttttttttttaAGATGTGTCAATTACGCTTTAATTCACATAAGATAGTGGATACATTACAATGACTTAATAACTTACAGTGTcttaatgctttataaaatatacactattGTGATAACTGAAGGAGGAAAGAAACGAGAGCCCGGACGAGGCACAGTGTTAAGCACTGACAGACACCAGGTTGCTTAGGCCGCTGAAGTAGGATTTCTCCCTCTCGCTCATCACCTCGAAGTGTAGTGGTCTTCTGCAGAAGTTACATTCAGCCGAAGAATGGGGTTTCAGAGCCAAACCAACTTCTTTCCAGGTTTTCACCAGTTTCTCTGTGggtagaattacattttttccatgAAACTGTACCGAAGAGCACAGGCGGCCTTCTTTAACCACAGCCATTAATACGTGATCAGTTCTCAGAAATCAGTTAACCTTTTGTAGTTAAGAAGATTTGAAGCTGCGTTTGAACGGTGTTAGGcctcttaaaaataattacctAGGAAGTAGTTCATCATCTGTGGGGTGTGGTGGGGCGTGGGGGCGATGCGCAGGAGTTCGTCCCCGCGGGCCACGGTGGGGTAGTTAATGGCTTGCACGTAGATGCTGTACCGGCTCATCATGATATCGCACACTTCGGTATTCTTCGCTGCATCTGAAACCTggacacaaaaaacagacaaagtaTGAATGGGAGGATGTGCGAATTCTTCTCTCTCATTAccaaatatggttttcatttaagaaGAACCACCAAGAAATTAAGAAGCATATTTTGTCTCTATATTCTTTCCTTACCCTGATGGGAATGATGTGACTCGGGCAGTGAACCACCGGCAGCCCCGCATCCATCAGCATCTGCCGGAGCAGCTTGACGTTGCGCTGGTGTTTGCGCCTCAGTGCCCGTCCCTCCTCACTCTTCAGCGTCTGGATGGATTCCTTGGCGCCAGCCAGCAACATGGGGGGCAGGGAGGTGGTGAAGATGAAGCCGGCAGCGTAGGACCGCACGGTGTCGATGAGGGTGGCGGTGCTGGCGACGTAACCCCCCACACAGCCAAAAGCTTTGCCTAacgagaaggaaaaaaaataaaataaaaaatcccttTGTTTCCT

Function

symbol description
alas1 Predicted to enable 5-aminolevulinate synthase activity. Acts upstream of or within neutrophil differentiation. Predicted to be located in mitochondrial matrix. Predicted to be active in mitochondrion. Is expressed in several structures, including EVL; digestive system; periderm; polster; and pronephros. Orthologous to human ALAS1 (5'-aminolevulinate synthase 1).

NR:

description
PREDICTED: 5-aminolevulinate synthase, nonspecific, mitochondrial-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU23467 True 1106 lncRNA 0.47 2 49582264 49670289

Neighbor

gene id symbol gene type direction distance location
AMCG00017176 tnnc1,LOC106571909,LOC108232086 coding upstream 99844 49481225 ~ 49482420 (+)
AMCG00017172 NA coding upstream 166302 49404227 ~ 49415962 (+)
AMCG00017171 pbrm1,LOC107699352,LOC107744848 coding upstream 184352 49384611 ~ 49397912 (+)
AMCG00017166 NA coding upstream 213425 49360827 ~ 49368839 (+)
AMCG00017162 LOC106565857,LOC105028386,LOC106583017,LOC105912203,LOC107706913 coding upstream 303578 49265461 ~ 49278686 (+)
AMCG00017181 NA coding downstream 7875 49678164 ~ 49697848 (+)
AMCG00017182 LOC105893506,LOC108431510 coding downstream 37246 49707535 ~ 49709079 (+)
AMCG00017184 NA coding downstream 78554 49748843 ~ 49765192 (+)
AMCG00017185 NA coding downstream 98671 49768960 ~ 49780898 (+)
AMCG00017188 NA coding downstream 120590 49790879 ~ 49796155 (+)
G18865 NA non-coding upstream 88915 49436264 ~ 49493349 (+)
G18791 NA non-coding upstream 371008 49206808 ~ 49211256 (+)
G18722 NA non-coding upstream 1255459 48322263 ~ 48326805 (+)
G18607 NA non-coding upstream 1517246 48062399 ~ 48065018 (+)
G18582 NA non-coding upstream 1727606 47854392 ~ 47854658 (+)
G18909 NA non-coding downstream 2796 49673085 ~ 49673926 (+)
G19040 NA non-coding downstream 484069 50154358 ~ 50154694 (+)
G19042 LOC103376870 non-coding downstream 485164 50155453 ~ 50155825 (+)
G19058 NA non-coding downstream 662177 50332466 ~ 50333366 (+)
G19059 NA non-coding downstream 663471 50333760 ~ 50334506 (+)
AMCG00017173 NA other upstream 178419 49402531 ~ 49403845 (+)
AMCG00017167 NA other upstream 200046 49372022 ~ 49382218 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other upstream 4620663 44949034 ~ 44961601 (+)
G18192 NA other upstream 4926166 44654652 ~ 44656098 (+)
AMCG00017078 LOC106565757 other upstream 5444333 44126214 ~ 44137931 (+)
AMCG00017183 NA other downstream 43178 49713467 ~ 49727567 (+)
G19113 NA other downstream 881591 50551880 ~ 50552985 (+)
G19114 raf1,LOC108276324 other downstream 889161 50559450 ~ 50563278 (+)
AMCG00017280 NA other downstream 3143964 52814253 ~ 52817369 (+)
AMCG00017287 NA other downstream 3150772 52821061 ~ 52834042 (+)

Expression


Co-expression Network