G18962


Basic Information

Item Value
gene id G18962
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 49726320 ~ 49726935 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU23537
TGAAAACTGTCTGATCCCTTGCTTACCATTACTTCAAAATCAAAGCAGCCAAAATCCAAACATGCATCTGACCTGCCCTTTGAGCACCGGCGAAATAAAAGATCAAGGAAGCTGCACATGTGGGCAGCATTACAGACCGCCACAAAGCTCGCAGGCCATACAAATCTAAAGTTTGCTTAAACCTTGCAGCTCTTCACATTTAGTAACCTTTTACAGCTACATGAGATAGTTTAGGGTCTGACTAAAGTACGCTGGACATGGACTTACGGTTCGTCGTCCGCACACGGGGCGAGCGCAATCATTATCGAACAGTCTTTGGCCGTCATCGCTACTCTGTACTGGTGGACCTGGAGGAGAAGATGAGAAACACGCATCCAGAACAATGTACAGATACTGcattgaacaaaacacaatgtcagATGCCTCACTAACGCAAAGCCACAGTGAGCTAATAGGTACAGAGCGCCCGTCTtatttacactgtaaacagGCCAATATCAGGCCTTGCCTCACCTTGCCAACAGCATATTCCACCGTCCCATCATCTTCAGAGGGACAGTTTCGCAGTTTTTCGAGGAAACTTTCGTTGTATGGCCCATCTATCTGTAATCTGCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU23537 True 616 lncRNA 0.46 1 49726320 49726935

Neighbor

gene id symbol gene type direction distance location
AMCG00017187 NA coding downstream 19799 49697995 ~ 49706521 (-)
AMCG00017179 NA coding downstream 50486 49669201 ~ 49675834 (-)
AMCG00017180 poc1a,LOC108424582 coding downstream 73099 49644147 ~ 49653221 (-)
AMCG00017177 dusp7,LOC107712495,LOC107677944 coding downstream 136918 49579589 ~ 49589402 (-)
AMCG00017174 nisch coding downstream 249016 49455494 ~ 49477304 (-)
AMCG00017186 NA coding upstream 648 49727583 ~ 49735347 (-)
AMCG00017191 NA coding upstream 117532 49844467 ~ 49845126 (-)
AMCG00017200 vgll4,LOC107570332 coding upstream 604836 50331771 ~ 50351799 (-)
AMCG00017199 tamm41,LOC106583779 coding upstream 650330 50377265 ~ 50384569 (-)
AMCG00017203 NA coding upstream 720450 50447385 ~ 50456112 (-)
G18961 NA non-coding downstream 645 49725197 ~ 49725675 (-)
G18945 LOC105893506,LOC108431510,LOC106566656,LOC107586924,LOC107593103,LOC107704447 non-coding downstream 17060 49707666 ~ 49709260 (-)
G18832 NA non-coding downstream 356769 49368618 ~ 49369551 (-)
G18831 NA non-coding downstream 358258 49367481 ~ 49368062 (-)
G18830 NA non-coding downstream 359879 49365206 ~ 49366441 (-)
G18970 NA non-coding upstream 36262 49763197 ~ 49765192 (-)
G19030 atp2b2,LOC107561799,LOC107570616 non-coding upstream 333912 50060847 ~ 50071504 (-)
G19043 LOC103376870 non-coding upstream 428495 50155430 ~ 50155834 (-)
G19049 NA non-coding upstream 460959 50187894 ~ 50190884 (-)
G19055 NA non-coding upstream 543473 50270408 ~ 50270657 (-)
AMCG00017178 NA other downstream 232176 49487197 ~ 49494144 (-)
AMCG00017158 NA other downstream 1231913 48489127 ~ 48494407 (-)
AMCG00017105 srgap3 other downstream 4565183 45118290 ~ 45161137 (-)
AMCG00017091 brk1,BRK1,LOC106565571 other downstream 5069415 44653455 ~ 44656905 (-)
AMCG00017067 sumf1 other downstream 6066718 43633770 ~ 43659602 (-)
AMCG00017232 NA other upstream 1457296 51184231 ~ 51212373 (-)
AMCG00017234 LOC100690894,LOC102799047,LOC102206238 other upstream 1703752 51430687 ~ 51435239 (-)
G19335 NA other upstream 1718652 51445587 ~ 51449786 (-)
AMCG00017251 actr8 other upstream 2119661 51846596 ~ 51860267 (-)
AMCG00017292 tusc2,LOC108433681,LOC104930950 other upstream 3131405 52858340 ~ 52866435 (-)

Expression


Co-expression Network