G19366


Basic Information

Item Value
gene id G19366
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 51565289 ~ 51571994 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU24023
atttattgatttagcCAGTATGACTACCTTTACACAGACAGAGCATCTTTCTAAACACATTTCTGGATTAGTTTGGAAGTAATACATTAATGTCTAAAGttactttttttcttgtctgattttttttttttaaacattttatacaaaccTCAGCTAACATCCTCAGATTCAATTGTCTCCTCGCTGCTACGGCTGCGTTGTCTTTGTTATTCGCATCTGTGTAAAGGTCCCATGGCTGGTGCACATGCATATGACATTAATTTGAGATCGATTTGCCACTAATGGTAATGCACATTAAAGTAATACAGTACTGCATGacatcatttcaaataaataccaaCATACAGatgaagtaattattttatataaaggtATCAAATTCTCATATGGATCAATACTGTAACAGAATATGACAATATAAAGTCTGCACGACTAGTTATCACAATGCTATCGCTTCCAGCAAACAGAAAACttagattttttccccccactcaaAACAGCATTTGAATTgcacttaattttaaaaaataacctttCAGACCATATCGATAACTTAACATTTTAATGCCTCGACAAACTGTACCCATGCGACGGCAGGACTAGCTTGTTGatgcaacatttgttttctgtttactgAAATCACACGGTTATATAGGATGTAGAAACCAATAACAACataattttgctttaaaaaaaaaaaaaaaggaaaacaaaatgaaacaaaaacaaaaactctttcATCTTCCACATTTGTCAACAATACTATCGATATCACGTGACCTTCACCACACACAGCTATAGATACgttaatatttcaaatagtACTATGTCCTGCAcccacaaatgtgttaatagattttcattattttgttcctTAGGAGGCCAAAGTCATTACATTTGGTTCCCAAAagttccattaaaaaaaaacacttctttaATCCCCTGAATTTGCAGTTCTGCATGCTATTGGGATCACCGACCAACAGAATTCAATACAATTTCGATTTTATTACCCTAATTACTACCATTATTATCTATGCAAAAAGGGGAATTCTCTTTGCACTTATTGCTCCGCATTTTCTTCGTCGAACTAAGATCCGTTACCGTTTCGTCTGATGcgtctaaaaataaaattagtctAGGATTCTccctcaaaatcatgaaaggcactACTGgcaagaatgaaaaaacaaaacaaaacaaggcgTCAAAACAATACACCCAAATCACACGGTCCTCTACGGTTTCCCGCTATTTGTCCTTTTCCGAAACACATCTAAAATGTACCAAGATTTGGCACGATAACCCAAGAGAGAATGAAACAATTCCAATTTGGAATTTATTTGGTGTCCTTGTAAGAAATTCTGTTGATCGGCGATCCCGCCTGAATATCGAGTCCAGAAAAACTGGAGCGGAGTAGGTAATACTAATCATTTTATTCATGGTTTTCAAGCCCCTACTACCGTTTAAACCAGAACAACGTCAAGTTTCTCCTTGTTACTTTGAACTATTcctaagaataataatatatgaaaaacCCCAGAATTTGCTCACCCTGGATTTTGTTTAGAACATGGCAGTTATAAcatcagtaaataataataattataataacaacaacaataataataataaacataacaaaaaataacaaaagcttATTAATATACCAATTGATTAATTCACCGTAGCACAGCAGGTTCGAATAGCGCTCTGGTTTGTGATGCATATAGagactgaaaagaaacaaacaaaggaaaagacggagaaaacaaaatcctattcatatgaatataaaaaaaaaaatactcacaaACCATAGCACTACATACCTTTCCTAGATAAACTCATATACCAAAAAGAAGCCAAAGtgaaataacaatattaaaagtgcacagttaaaaaacaatgtttgagtaaaaacactaaataattgaaaataaatcatgttgaGAAGTGACCCCCCCGTCTCTTTTGACGTTCTGTAGTCAATCATAATAACCTATTGTCATCATTTCCAAGGGAAGTGGGATTTTCCTCAAATACTTGTGAGCATCTTCCTGCAGCAGCACTTGAATGGTAAAACTACATTGTGTTtccaccaaaaacaacaacaaaccgaGACTCCCAcgccacagtgtgtgtgtttatttactgtCGAAGGAACGGGTcagtttttagtttaaaaaatagacttCCAAGTGGTTTCCATTAAGCTCTATCAACCGGGCAACGGACTAGGTGTTGCCGGTCTACGAAACGAAGTGTGGCGTACAACTGCACCCTTTGTCGATAACTCCGCATCCGGGATCTACGCTAAGACTGGAAACaatagagaaacaaacaaaaagtcaaaattagaagaaaaaaaaacaaatttgtatatatatatatttaaaaaaaaaaaaaaaaaaaaaaaaaaaacctttgagATGCATCTCTTTGCCCCTTTGATTGTTTTCTCAAGAGGACAATAATGATAACATATAATCAAGACCACCAATACAGAATCTTATGTGGGCATTGCAAAGATACAGCATTGCTTTTCAAGGTCAGAGAAAATGGGCATACGTGGCAAAAACCTCTTTTTGCACGCCT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU24023 True 2598 lncRNA 0.34 2 51565289 51571994

Neighbor

gene id symbol gene type direction distance location
AMCG00017230 NA coding upstream 350773 51214259 ~ 51214516 (+)
AMCG00017231 NA coding upstream 352898 51212179 ~ 51212391 (+)
AMCG00017229 NA coding upstream 388830 51169613 ~ 51176459 (+)
AMCG00017226 NA coding upstream 400041 51159919 ~ 51165248 (+)
AMCG00017227 NA coding upstream 496964 51048621 ~ 51068325 (+)
AMCG00017243 NA coding downstream 67643 51639637 ~ 51640615 (+)
AMCG00017238 NA coding downstream 75410 51647404 ~ 51649518 (+)
AMCG00017237 NA coding downstream 81536 51653530 ~ 51663841 (+)
AMCG00017246 LOC106571974 coding downstream 151705 51723699 ~ 51725528 (+)
AMCG00017248 LOC107743249,LOC106566685 coding downstream 185731 51757725 ~ 51827775 (+)
G19292 NA non-coding upstream 225172 51339913 ~ 51340117 (+)
G19275 NA non-coding upstream 268571 51295832 ~ 51296718 (+)
G19245 NA non-coding upstream 426454 51137293 ~ 51138835 (+)
G19195 NA non-coding upstream 837138 50727740 ~ 50728151 (+)
G19152 NA non-coding upstream 924487 50640587 ~ 50640802 (+)
G19465 NA non-coding downstream 534954 52106948 ~ 52116341 (+)
G19515 NA non-coding downstream 975755 52547749 ~ 52548031 (+)
G19588 NA non-coding downstream 1224938 52796932 ~ 52802211 (+)
G19591 NA non-coding downstream 1278937 52850931 ~ 52854722 (+)
G19617 NA non-coding downstream 1286159 52858153 ~ 52863723 (+)
G19114 raf1,LOC108276324 other upstream 1002011 50559450 ~ 50563278 (+)
G19113 NA other upstream 1012304 50551880 ~ 50552985 (+)
AMCG00017183 NA other upstream 1837722 49713467 ~ 49727567 (+)
AMCG00017173 NA other upstream 2161444 49402531 ~ 49403845 (+)
AMCG00017167 NA other upstream 2183071 49372022 ~ 49382218 (+)
AMCG00017280 NA other downstream 1242259 52814253 ~ 52817369 (+)
AMCG00017287 NA other downstream 1249067 52821061 ~ 52834042 (+)
G19683 NA other downstream 1763915 53335909 ~ 53339655 (+)
G19754 NA other downstream 1931438 53503432 ~ 53536464 (+)
G19829 NA other downstream 2218553 53790547 ~ 53792694 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G799457 LOC106571893 non-coding NC_048573.1 CM023227.2 36827899 ~ 36833763 (+)