G19548


Basic Information

Item Value
gene id G19548
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 52649008 ~ 52665182 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU24251
GACGGACTGTGTTGCGCCTCAGCAAACTGATGAAGGAAATAAAGGCTCCTGCCGCTGCACCGGAGGATTGACGCTTCAACACCGAGTCCCGAGCAGAGCTGGCACCGCGGATGCGAGAGGGTCCAGGGCGGCGAGGATGCATAGGTAATGCCCAGTGAGCACTCCGGGGGGCCATGTCTGACGAGGCGAACTCAGGGAGTGATCTGGACCCCGACCTCGACCCCGAGGAAGAGGAtctggaagaggaagaggaggagatggagggcgAGAACGACGGAGACGACGAGGAGGATGGCACCGTGTAACCTGGCAAGCCAGTGACTTACTGTGCTGATGAAAGACTGGTGTGACTCGAGGGCTGTCGAATACCAAATCCACCAGGACTTGTCTGTTTTGTCATCTGTGCgggtgtatttttaaatgtacctaGCCACAAGGATGAGGAGGTGAAATTGAATTCTCATGGGAAGGACTCCCCGTTGTGTGCCGTGCCGTGCCCCTTCTCCACGGGCTCGGATCACAGATCACGGATAGTTTGAAGTTGAATGCAGCATtttagcttttttgttgttgttgttgttgttgttgtttaacatGAGACCGTCGGTGTATTGTGTGTCAAAGATTTACATCGGGTGAACAAAATCTTTCAAGACCCCTGGGGGAGAGGAACGAGGTGTGGTTTTGCAGAGAGACGAAAGTTTTGTAACTGAAGTGGGGTGGGGAATCGATTGAGGTGAAATCTCCACTGCGACTGAATGCGAACACTGGGTATGaacatacagtgcctatagagaGTCTGCACCCCCTCTACTGCCATGTATagactggaattaaaatgcattaaaatccttttaattttttcacttATCTACACATCCCACCCCACAGCTTCCAAGTGgaatgtattaaacataaaaccTACAAATAGAAACCTGGACCTCTTTGAATGCATTTAGTGTCTTCCTcgtgtttattcatgtttt

Function

GO:      GO:0008536

KEGG:

id description
ko03440 Homologous recombination

RNA

RNA id representative length rna type GC content exon number start site end site
TU24251 True 986 lncRNA 0.49 3 52649008 52665182

Neighbor

gene id symbol gene type direction distance location
AMCG00017271 NA coding downstream 11402 52621765 ~ 52637606 (-)
AMCG00017273 NA coding downstream 32950 52609271 ~ 52616058 (-)
AMCG00017272 NA coding downstream 43543 52595680 ~ 52605465 (-)
AMCG00017270 NA coding downstream 82299 52565296 ~ 52566709 (-)
AMCG00017269 NA coding downstream 110754 52522749 ~ 52538254 (-)
AMCG00017274 NA coding upstream 4175 52669357 ~ 52670496 (-)
AMCG00017278 NA coding upstream 80125 52745307 ~ 52745789 (-)
AMCG00017277 NA coding upstream 80877 52746059 ~ 52751516 (-)
AMCG00017276 NA coding upstream 97929 52763111 ~ 52767644 (-)
AMCG00017284 NA coding upstream 106947 52772129 ~ 52795850 (-)
G19516 NA non-coding downstream 100958 52547737 ~ 52548050 (-)
G19330 NA non-coding downstream 1210915 51437880 ~ 51438093 (-)
G19316 NA non-coding downstream 1352265 51295831 ~ 51296743 (-)
G19259 NA non-coding downstream 1483333 51165358 ~ 51165675 (-)
G19150 isy1,LOC108431508,LOC107700632,LOC108254962 non-coding downstream 2010237 50637315 ~ 50638771 (-)
G19551 NA non-coding upstream 14771 52679953 ~ 52691186 (-)
G19604 NA non-coding upstream 103720 52768902 ~ 52769415 (-)
G19663 NA non-coding upstream 344696 53009878 ~ 53010218 (-)
G19687 NA non-coding upstream 573024 53238206 ~ 53238409 (-)
G19741 NA non-coding upstream 753003 53418185 ~ 53419077 (-)
AMCG00017251 actr8 other downstream 788741 51846596 ~ 51860267 (-)
G19335 NA other downstream 1199222 51445587 ~ 51449786 (-)
AMCG00017234 LOC100690894,LOC102799047,LOC102206238 other downstream 1213769 51430687 ~ 51435239 (-)
AMCG00017232 NA other downstream 1436635 51184231 ~ 51212373 (-)
AMCG00017178 NA other downstream 3154864 49487197 ~ 49494144 (-)
AMCG00017292 tusc2,LOC108433681,LOC104930950 other upstream 193158 52858340 ~ 52866435 (-)
AMCG00017299 NA other upstream 529651 53194833 ~ 53215336 (-)
G19730 NA other upstream 718158 53383340 ~ 53387709 (-)
AMCG00017313 NA other upstream 786936 53452118 ~ 53531131 (-)
G19808 NA other upstream 1010901 53676083 ~ 53728883 (-)

Expression


Co-expression Network