G19588


Basic Information

Item Value
gene id G19588
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 52796932 ~ 52802211 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU24295
gcccagtcgACCTCGATTTTGCATCAAGATGgcgagaggaaaggatctaagtgactttgaaagagggtcattattggggcaccagagatgcagaaaaaagtgatctggtcagatgagtcatccttccccatattctggacaagtgggcgagtgcatgtgtgggacaccaagagaacgggacaggcctgactgctggacccctacagtgagggggtccggaggctctgttatgctgtgggggggcattttcctggcatggtttgggtccacttgtccccttagagggaagggtcactgcaaatcatgacagagttattctgagtgatcacctttatcctatggtgacacatttctgtcctgatgggagtgtctcttccaggatgacaatgcccccatccacagggcacgagggtcactgaatggtgtgatgagtatgaaaatgatgtgaatcatatgctatggccttcagtcatcagatctcaacccaatcgaacacctatgggagattctggaccaaCATGTGAGACaggctctccaccaccatcatcaaaaccccaaatgagggaatatcttttggaagaatggtgtccatccctccagtagagtccagagactcgtacaatctgtgccaagagcattgaagctgttctggggctcgtggtgcccaacaccttactgagacactttatggcggttgttcctttaatttgtcacccgtctgtatatttgtgtttatttatgcatttctagGGTTCCCAACCGACACCAACCAGCTTCATTTCAAGTCCAATATTGGAACAGAGAAGATGAATGAGAAAGTAACTCGGTAAACCCCCCTGCTGGCATCAGTGTGCGCTGCAGCAGTAATGCCCTGCCTCTGCTCTCCTCTGTTTAAATAATACTCTGTGTATCAATACAGCACTGGTTACTAATACTGGATGTGTGGATGAATACTGCTCTGAGGAACCAAACCCCACCATTTATCAACACAGCACTCGATCAATAAAGCTCTGATAATCAACACAGCACTGTTTTATCAGTGATCACTCTCCCCTGCAACCTGTGCCTGATGTTCACCGCTCCATTGTCTGgtgtgctttattggcatgacgtgcacaagtattgccaaagcagaaGTGATAAATGTCAAACCGTTTCAGATGTAGATGCACACACAGATATTTATGGACAATAATTAACCATAATAAGCAGGTACATGTATATCAATAAAAAtagatcaatacatttaaacgACGGTTTTGAAAAAAAGCAATGACAGCagatcaaacaatacaaattcaaacagattcaaacataaataattacaatcataatgcaatataacaataaataactgCTCTATGAAtgctctctgcctctgtctccccctctcgcTCTCAATGAGGTTTATTGGCAGGACATGCTGGTGATGCCAAAGCTTCCAAAGAATATTCCAGCCACAGAAATACtgaataccaaaacaaaacaaaaacacaaaaataataatacagggtGGGCAGGCAGGGGGTCATGTATTTAACAGCTATGGTTGCAGTCCTTGAATCATACACCAATTTATGCATACACTACTGCATAGGTAGGTAGGTTCATTTCATGTCACAGAAAATGAAGTTCACATAATATAGGGAGAGCAGGAAAGGATGGGAAATACACACAGTATAAACATCaggtccccccccccccccgaagcAATAACCAATCAAGGGCCCTAACAAAGatttgaacaataaaaacaaagtatcTGAGAAAGAACACTCAGAATGTATTAAACGTGTTCCAGCCCATAAATATACTCATCAGAGTGCAGACCATCATACACTGATGGGCCTCTGGTCTCTGTACAGACTCAAGTCTGAGCTCATCTAGGATTTCGCAGGACTCCCGCTTCACCCAAAGTGCTAGTAAACACTTGAACCCCGACGTCTCCTGCTCTGACTCAGTCTTTTCACACGTCATCTCTCAAGGAGCACAATGTTTCGAGTTTAACGCCTGAAGCCACAGCGTGGGCAGAGTGCAGCCCGTACACGGCACAGAGCTCACACACTATGCCATACAAAACCCCACCACCCTGAACAAGGCTTTGTGTGTACGATGGTGCCTGTGGCCATGCGACACAGCGGGGGGGAGGTTGACACTCCTCTACAGACACTGGCAGACGAGCTGCTGTGGCTGTGCACCTcctgcgtgtgcgtgtgcgtgacCTGACTCAGGATTCAGCTGAAACTCCCCCCAGCTGTCGTTTAGGTCGGGTCAACGGGGTCTTGATCTACACGGTGCAGAAAAGGGTTTCACGGACTCTTCTGCCTGCTAATTCACCCCTCAGACAGGAATGGGTTCAGTTTTGCCAACATACCAGTGAGTTGGGGCCGATCAGAATAGAAATCCAGCTCAAGCGCGTCTCCCTCCGTGTCGAACGCGGATGAGGGTGGAGACGGTGCAGCTCGATATGGGTTTGTTTTATCTGGGTTTGTGTGTCAGCTTCTCTGACTAGCTCCCCTACAGCCAGATCTCGAGTCACACTTTGCTTTAGGCCCCTGTCAGCTTGTGGAGCCCAAGGGCCAAGCCAACACTTCACATAATGGGAAACTCAACAGGGCTACAGTGACCTATTGCATAATGACATCACACTCAGAGCCGCATCTGGCTCTATGACGAGTTGCATCGATCCAGAGATCAGGTCCCCAACTGACACAGACGACCTTCATTTCGAGACTCGATTCAGAGCAGAGAAGACGCTCGACATGTTCTCTCTGCTGGTGAAGATTGTATTCTGTATCCTGGTGGTTTTTAGGGTCGGGGTGGATCAGCTCTCCGGGGCACCGTGGTCCCTAGGGCTGCCCTGCCGGGAAGCTCAGTGCACAGCATGCCCTCGCCCCCTGGCTGCTCCACCACTgcatcttattttaattgaatgttttaaagcttaaaaaatgaaatacaatgaatGAGAAAGTAACTCAGTAACCCCACCCCCTGCTGGAGTCAGTGTGCACTGCAGCAGTAATGCCCTCCCTCTGATCTCCTGACCTCCGTGTTTAAAGCTCTGTTCCGCTCTGCAGCTTCCTCTGCCAAACCGTCTCCCACAGCCTCCAAGCACCGGCTGGCATGGACACATGACCCCCCCCCCGGGCTCACCAGGCCTTGAGATGCCATCACAGCCTCGCTCCACCAcgctgtctcacacacacaggacaaacCCTATCCTCACAATAAAACCCAATGTTCCTTCCTGCCAGTTCCTGCTGCTCTGGTGATGTTTCGCGTGGCGTCACGGTGGTTTCCTCATTATTAGCTTTAAAccgagtctctctctctctatccaggTGAACTGCAGTGAAATTAAGAGTAATTAAggtgtttttacatcataactcctctataatatgcaaatatgagtCTAATAAGGAAAGGACACAACGTGACGGAAGGTGGCTTAAAAGTGTCATAAGGGAACAAGAAATGTCGTACGGGGCTGTGGGCCAAATATGATGCTGTGACACGTTTGTCCTCTACAAGACGGCAGTGTGGTGCACTGTGGTAACATACAGTACGATGTAGTGTGGTGTAACATAGTAAAAAAGTGGCAAAGTATAGTTTACCATGGTCAAAACAGAAGTTAAaatggtaaagtgtagtgtggtgtagcaGTGATAAATGTGGTAAAATTAGGGTAAAAAGTACCCTTCACAGGTACAGCACctttcacagggtagccacagagcactttaaataaaatagacaaataaactaaacacaaaaatagacaaacaaaccattaggcacagaggacaGAAAAAACTCCTATATGATGGCAGTCTGGCAGCAGAAATAAATCTTGGGGGGTGCACAGCTTACGGGCCAATTGGCTGCCCCCTCATGCTGTACAGCCCCCGCCTCCGAGGGACACATACACAACTTATAGTAGCAGGGACCCCCATCTGTCTGCTGTCATCTGCTGATTCACACCCCGTtctattaattcattttaaatcgcACGTTGCTGGTTCATAACTTGATAAAAGGCGAGACTCAGAACTTTCAATGGTTTTTCACATgaagactactactactaccactactactactaataatacaaataataatatgtctgTGCTTATTTAATGAACCATGGAATATATGTAGAATACATAACCTCTCAGACACATTGTATGGGAATAACTCCTGTGGCAACTGGCTAAGAGGAGCAGAGCACAGTAACTACTACCACAAGACAATCTGCACCTggtaggaataataataatattataagaaGTAGAATCATGAATGAAAATGGAGCGAGCAAACTGCTGTTTCACATTGCACCATCGAGTTACTGTGACCATTCGCATCCAGGGTGACGTCACCAGGGATCCCCATGGGAAGATAACGTTCGGCGACGTCACAGACGCCGCAACAGCTCGTTTACGTCACTGACGCCGCAACAGCTTGTGTTCGCTTTGGAAGCCGCACTTTCGACACGCCTGCTCCCTCCCCCGCCCACAAGAAACGCTTCTGTATCTCGATGCTGTTTTTCAAAGGTGCAGCTCAGACACGTCTGGCCCGGACAGCAGCCCTCCCTCCCCGCTCTCGCTGTGCCCGTCTTCGCAGGGCGGGCCTGTCTGATGATGACCTCATGCTGGGTTATAAATAGTCTCAGTCTAAAAATAGGCCGCTATAAAAGCCGCGGTCTGCGCGGGCCCTCACTGTTCCGTCAGACTGCGGGACGGCCGAGCGGTCGAGCGATAGACAGGGAGACTGGCCCGTTAAACACGCCTCTCCCCGCCGGTCTCTCCGCCGGCCCGGCCCGGCTCTGCCTCAGTCACTCGGCGGGCCGCTGCGGTTTCTCTGCCCGGCTCGGGGACCTGAAGCGCCACGTAGTTTCAGTCCGGACTTGGGCGGAGATAACGACTTCCTTCCTCGGAAACATTTCAACATCGTCTGCGGAGTCcaacccctctctctgtccgtgTATGCATCTCGCCATGAaggtatatttatatagattatAAGGCGCATTGTCCCTTCGTTCAAACCGCGCCAGTATGAGAAAGCAATACTCGGAGAGGACGGGACATGGACAagttaatgcaaaaaaaaaaagcacagggGCAGTTAGAGGCCACACAGATACCCCAGCTCGGTTTTGCCCCTGGTGCCCATGGCGGTGAGAGGAAAAACACTGGGCTCTCCCGTGTGAGTCTCGGGCTGGTGAGGTACAATATCTCCCTGTGCTCTGTCAGGAGACTCGGTGCTCCTCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU24295 True 5280 lncRNA 0.48 1 52796932 52802211

Neighbor

gene id symbol gene type direction distance location
AMCG00017279 NA coding upstream 36428 52757463 ~ 52760504 (+)
AMCG00017275 NA coding upstream 53041 52741163 ~ 52743891 (+)
AMCG00017267 NA coding upstream 383021 52384020 ~ 52413911 (+)
AMCG00017253 cacna2d3,LOC103362818 coding upstream 781777 52005220 ~ 52015155 (+)
AMCG00017252 cacna2d3,LOC103362818 coding upstream 811564 51948217 ~ 51985368 (+)
AMCG00017288 NA coding downstream 115841 52918052 ~ 52922397 (+)
AMCG00017290 NA coding downstream 128279 52930490 ~ 52933688 (+)
AMCG00017289 acy1,LOC105933287 coding downstream 134689 52936900 ~ 52951955 (+)
AMCG00017297 cacna2d2,LOC107666002,LOC102776731 coding downstream 452456 53254667 ~ 53275017 (+)
AMCG00017301 NA coding downstream 484218 53286429 ~ 53302089 (+)
G19515 NA non-coding upstream 248901 52547749 ~ 52548031 (+)
G19465 NA non-coding upstream 680591 52106948 ~ 52116341 (+)
G19366 NA non-coding upstream 1224938 51565289 ~ 51571994 (+)
G19292 NA non-coding upstream 1456815 51339913 ~ 51340117 (+)
G19275 NA non-coding upstream 1500214 51295832 ~ 51296718 (+)
G19591 NA non-coding downstream 48720 52850931 ~ 52854722 (+)
G19617 NA non-coding downstream 55942 52858153 ~ 52863723 (+)
G19641 NA non-coding downstream 131553 52933764 ~ 52935403 (+)
G19660 NA non-coding downstream 204949 53007160 ~ 53007531 (+)
G19664 NA non-coding downstream 222414 53024625 ~ 53024934 (+)
G19114 raf1,LOC108276324 other upstream 2233654 50559450 ~ 50563278 (+)
G19113 NA other upstream 2243947 50551880 ~ 50552985 (+)
AMCG00017183 NA other upstream 3069365 49713467 ~ 49727567 (+)
AMCG00017173 NA other upstream 3393087 49402531 ~ 49403845 (+)
AMCG00017167 NA other upstream 3414714 49372022 ~ 49382218 (+)
AMCG00017280 NA other downstream 12042 52814253 ~ 52817369 (+)
AMCG00017287 NA other downstream 18850 52821061 ~ 52834042 (+)
G19683 NA other downstream 533698 53335909 ~ 53339655 (+)
G19754 NA other downstream 701221 53503432 ~ 53536464 (+)
G19829 NA other downstream 988336 53790547 ~ 53792694 (+)

Expression


Co-expression Network