G19641


Basic Information

Item Value
gene id G19641
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 52933764 ~ 52935403 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU24364
GGTCGGTTCTGTGACGCATCTCTGAGCGCTGGAGCCCTGTCAGATATAATCGGAGGGAGGTGAGGGAGGTTCTCCACCCCAGCACACGCCTCCCGAGTCAGGCAGGGATTCCAGCCCAGATTCCAGATTGACGAGTCCTCTGGGTCACACTGGTGACTGCAGCACAGATTTTCTGGGGAGAGGAAAACGCAGAACCATCTCAGGGGCGATCGTTCTCTCTGAACCAGGTGTACATACAGCATGATGCTCCTCCGCTCCTCGTCTGCTTCTGTCAACACTGAGGAGCTCCTCATTTCTAAACTCCTACAACGCTTTTAATTGGTTTCATCTTAGTGTTatgtttgcactttgttttctaTGACTAGTAGTATGTTGAGGAACCgaagaagatgatgatgatggttattATTTCCTCATTCTGTACGTATTGCAGAATTGTTGCCTggactgtgatttatttttgcctcaacgctttttcttttttgatgaGATTCATTTCCAAGATGAACTAAAGCTAACGATCAGAAAGAGCTTTAATGAGGCGTATAAGTCCGTGACAGTCTTTGGGAGGGATGAGATTTTTTTACTGCGTGACCACTATTTATTTCACTTCGTTGTTGTCCTTATACAACAATGGCTTTGTTAGCTATAGATGTATTATGATTCTGATGCTACACTACCACATGCTTGTCTGCTCTCTAATCGCTCAGTTACACAAGCGAACAATCGTGACTCAAGATCAAGTGTCTGGACTCTGATGGGAGACGAGTGAAACATGTCGGTCTGGTGATCTGGTGGACCAGTGCTGGAGACCCTGCTCTGGACTCAACCAGAGGTATCACGTCTCACAAACCGTCCAGCAGGTTTCCCAGCCTCCCAGAGTGAGGAAGAGAAGCGACTTTAGTTCTGTTACGACAGTGAGTTGACCTCGCTGGAGGCGCTACGGGGCTCCAGAACTGGGCACCGCTGAGGGTCAAGCTCAGGCCAGCAGGGGTTCGTCCTGTCCAGACCACGGACGATCAGCGACTTTCACACACTTGGATGTCATATTCTCTCCTGAACGTTTCTTTTGAATTACACAGTGTTTCATCTCAGTGAAATACATCTTGGCATTATTTGTTGCTATTAatcaaatacatgaaaaaaagcCTGTTAGTATGTATGAGttggttatgtatttatttaaatatttaaataaacagtatttaaactAACCATGTGGGGTTTGTTTGCGTGACTATTTATTTGCTGTTTGCTTGTGGCCACACCGTCTTGAACGCGCCCGATCTCGTCAGATCTCGGAAGCTAAACAGGGCAGGGCCTGGTCAGTACTTGGATGGGAGACctcttgtacttcactgtatttttgcactttgtttgcgcttatgttgtaagttgccctggataagggcgtctgccaagaaataaaaataataataataatgatcctaatcaatgtgtatttatcaagtgaattagaaaatacatttccccAAATGTTAttgataaaacattataaatgagCTGCAGAATATTCCTTAGCCTTTAAAATAGTGTCCCAAGTTATGCTACAAGTGTGTTCATCACTGTTTctttatacatgtttatttaatcagcTGATTAAAAAAAGTGGTGTAAAT
>TU24365
GGTCGGTTCTGTGACGCATCTCTGAGCGCTGGAGCCCTGTCAGATATAATCGGAGGGAGGTGAGGGAGGTTCTCCACCCCAGCACACGCCTCCCGAGTCAGGCAGGGATTCCAGCCCAGATTCCAGATTGACGAGTCCTCTGGGTCACACTGGTGACTGCAGCACAGATTTTCTGGGGAGAGGAAAACGCAGAACCATCTCAGGGGCGATCGTTCTCTCTGAACCAGGTGTACATACAGCATGATGCTCCTCCGCTCCTCGTCTGCTTCTGTCAACACTGAGGAGCTCCTCATTTCTAAACTCCTACAACGCTTTTAATTGGTTTCATCTTAGTGTTatgtttgcactttgttttctaTGACTAGTAGTATGTTGAGGAACCgaagaagatgatgatgatggttattATTTCCTCATTCTGTACGTATTGCAGAATTGTTGCCTggactgtgatttatttttgcctcaacgctttttcttttttgatgaGATTCATTTCCAAGATGAACTAAAGCTAACGATCAGAAAGAGCTTTAATGAGGCGTATAAGTCCGTGACAGTCTTTGGGAGGGATGAGATTTTTTTACTGCGTGACCACTATTTATTTCACTTCGTTGTTGTCCTTATACAACAATGGCTTTGTTAGCTATAGATGTATTATGATTCTGATGCTACACTACCACATGCTTGTCTGCTCTCTAATCGCTCAGTTACACAAGCGAACAATCGTGACTCAAGATCAAGTGTCTGGACTCTGATGGGAGACGAGTGAAACATGTCGGTCTGGTGATCTGGTGGACCAGTGCTGGAGACCCTGCTCTGGACTCAACCAGAGGTATCACGTCTCACAAACCGTCCAGCAGGTTTCCCAGCCTCCCAGAGTGAGGAAGAGAAGCGACTTTAGTTCTGTTACGACAGTGAGTTGACCTCGCTGGAGGCGCTACGGGGCTCCAGAACTGGGCACCGCTGAGGGTCAAGCTCAGGCCAGCAGGGGTTCGTCCTGTCCAGACCACGGACGATCAGCGACTTTCACACACTTGGATGTCATATTCTCTCCTGAACGTTTCTTTTGAATTACACAGTGTTTCATCTCAGTGAAATACATCTTGGCATTATTTGTTGCTATTAatcaaatacatgaaaaaaagcCTGTTAGTATGTATGAGttggttatgtatttatttaaatatttaaataaacagtatttaaactAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU24364 True 1640 lncRNA 0.43 1 52933764 52935403
TU24365 False 1214 lncRNA 0.45 1 52933764 52934977

Neighbor

gene id symbol gene type direction distance location
AMCG00017290 NA coding upstream 76 52930490 ~ 52933688 (+)
AMCG00017288 NA coding upstream 11367 52918052 ~ 52922397 (+)
AMCG00017279 NA coding upstream 173260 52757463 ~ 52760504 (+)
AMCG00017275 NA coding upstream 189873 52741163 ~ 52743891 (+)
AMCG00017267 NA coding upstream 519853 52384020 ~ 52413911 (+)
AMCG00017289 acy1,LOC105933287 coding downstream 1497 52936900 ~ 52951955 (+)
AMCG00017297 cacna2d2,LOC107666002,LOC102776731 coding downstream 319264 53254667 ~ 53275017 (+)
AMCG00017301 NA coding downstream 351026 53286429 ~ 53302089 (+)
AMCG00017300 NA coding downstream 421178 53356581 ~ 53363297 (+)
AMCG00017303 NA coding downstream 439481 53374884 ~ 53380042 (+)
G19617 NA non-coding upstream 70041 52858153 ~ 52863723 (+)
G19591 NA non-coding upstream 79042 52850931 ~ 52854722 (+)
G19588 NA non-coding upstream 131553 52796932 ~ 52802211 (+)
G19515 NA non-coding upstream 385733 52547749 ~ 52548031 (+)
G19465 NA non-coding upstream 817423 52106948 ~ 52116341 (+)
G19660 NA non-coding downstream 71757 53007160 ~ 53007531 (+)
G19664 NA non-coding downstream 89222 53024625 ~ 53024934 (+)
G19675 NA non-coding downstream 303703 53239106 ~ 53283206 (+)
G19674 NA non-coding downstream 341478 53276881 ~ 53320938 (+)
G19679 NA non-coding downstream 370692 53306095 ~ 53335384 (+)
AMCG00017287 NA other upstream 99722 52821061 ~ 52834042 (+)
AMCG00017280 NA other upstream 116395 52814253 ~ 52817369 (+)
G19114 raf1,LOC108276324 other upstream 2370486 50559450 ~ 50563278 (+)
G19113 NA other upstream 2380779 50551880 ~ 50552985 (+)
AMCG00017183 NA other upstream 3206197 49713467 ~ 49727567 (+)
G19683 NA other downstream 400506 53335909 ~ 53339655 (+)
G19754 NA other downstream 568029 53503432 ~ 53536464 (+)
G19829 NA other downstream 855144 53790547 ~ 53792694 (+)
AMCG00017325 nckipsd other downstream 859223 53794626 ~ 53805796 (+)
G19854 NA other downstream 918504 53853907 ~ 53855839 (+)

Expression


Co-expression Network