G20078


Basic Information

Item Value
gene id G20078
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 54452621 ~ 54454276 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU24938
TcaagtgttgtttgtttttttaatcttcttttctttttacatttcgAGACAGAAGAGCTGTGTTGAACACGTCTGTGTTTTCTGCTCGGCCAGCATCTCTTCAGTTAAAGAGAGAACAAACGGCTTCAATACAACAGGAACATGTAAAAATAGCACCATTCTTTTGCCAGGACAGACATGCAATGTTacacttaataataacaacaataaaaataataattatcatcattttaaaaatattatataaaaactaacaaaaaataaacaatatgagtatttcccacataataaaatatatatttgtacacagTAGCAGATTCCCGTTCTCTCTCTAACACTGGTGTGCGTCCGGAGAGCGAGGCACCTGGGGGCAGGCAGGCGGGGTGGACACGGGTTCGGGACAGAGATAGGTGGGCCTCGAATACTGACAGTCACTGCGAACAGAGCATCTCAGGAGGAAAGCAGGAAAGTCTCTCTCAGAGTGGGGGGAGGGGACTGGAGGGACCGTGAAGATGATGGACTGATGTCTTCTGACATACTTTAGTTTTGGTGCCTAATACTCCAGCTCACAGGGCTGGGTTTGTATCTCATCAGGTGCCTAGATCTCTCTGCCCCTGCAGTCTCTCAGAACGGAAATATTCCAAGATGTGGGGTCCGCACGAGGACAGGGGGTCCGGGACTGACCCACACACAGCTGAGCACCTGAGCGAGACGGGGGTTCGGTCCCCTCAGAGTTTCGCTGCTCAACTTCGACACGTCGTTTCGCAGAGAGGAGGGAGTCTTGAGTTCAGATATTGCGGAGGCGGGGGATTCTGGGATCAGGGTGGGATGTGTAGGGATGGCTGTGAAAAGAGGCCAAGAATTCTGCTGCCCAAAAATTACAGTTAAAGGAACTTCAATGTATACTGCATTCTAtatactgtgtctgtgtgtgtatatatatttatacatatacagctctggaaaaaattaagaggcCACTCCacgttcagaaatcaatgttaagtgatctcttaattttttctagagctgtatatatatattcaaatattgaCGAATGATCTTCTTTGTTTGAACttggagacagacagacacacacacacacacacacatacgcacacacaaacacgaacaaacagacacacaggctctcacaaacacacacaggaaggtAGTAACATTCAgtgtttcaatgtgttttttttccccctgctctGTGTATATAGCGTCTCGTagagtgactgtgtgtgcgGGAGCTGGGAGGGTGGAGGttgtgtattgggggtgtgtgtgcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcatgtgtgtcagtgtgtgtgtgagtgtgtgagtgagtgtgtgtgtgtgtgtgcatgtgtgtgtgtgtgtgagtgtgtgagtgagtgtgtgtgtgcgcgagtgtgtgtgtgtggtggggccagtgggggttgggggtgtaGAGGAGAAAGGGAAATCAGCTTTTCCTGAAGAGTCTGTAAACCACACAGAGGGGGTCTGGTGCCGGTCCGCCAGTCCACCAGTCCGCCAACAATCAGCTCTCCCTCGTCTTGGACGCCGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU24938 True 1586 lncRNA 0.47 2 54452621 54454276

Neighbor

gene id symbol gene type direction distance location
AMCG00017353 NA coding downstream 100042 54343401 ~ 54352579 (-)
AMCG00017352 LOC100305111 coding downstream 129168 54317093 ~ 54323453 (-)
AMCG00017346 LOC106583208,LOC106565550 coding downstream 176282 54264090 ~ 54276339 (-)
AMCG00017342 ruvbl1,LOC107721190,LOC107667375,LOC107568195 coding downstream 300773 54147224 ~ 54151848 (-)
AMCG00017344 NA coding downstream 336337 54107703 ~ 54116284 (-)
AMCG00017360 prkar2aa,LOC103384990,LOC107669629,LOC107717523,LOC107556498,LOC105906428 coding upstream 101081 54555357 ~ 54558595 (-)
AMCG00017362 prkar2aa,LOC108265715,LOC107679546,LOC107591783,LOC107711958,LOC105906428 coding upstream 115995 54570271 ~ 54570558 (-)
AMCG00017359 slc25a20 coding upstream 118149 54572425 ~ 54578093 (-)
AMCG00017365 arih2,LOC102785176 coding upstream 125794 54580070 ~ 54587525 (-)
AMCG00017368 NA coding upstream 134783 54589059 ~ 54595357 (-)
G20066 NA non-coding downstream 81955 54369752 ~ 54370666 (-)
G19992 NA non-coding downstream 394694 54056885 ~ 54057927 (-)
G19957 NA non-coding downstream 397522 54054836 ~ 54055099 (-)
G19923 NA non-coding downstream 411588 53904295 ~ 54041033 (-)
G19918 NA non-coding downstream 537745 53894336 ~ 53914876 (-)
G20116 LOC106929785,LOC108235569,LOC103465231,LOC103143233,LOC106950531,LOC105927081,LOC106517999 non-coding upstream 40659 54494935 ~ 54498038 (-)
G20118 NA non-coding upstream 55960 54510236 ~ 54510488 (-)
G20122 NA non-coding upstream 124989 54579265 ~ 54579718 (-)
G20131 NA non-coding upstream 153087 54607363 ~ 54607614 (-)
G20137 NA non-coding upstream 160970 54615246 ~ 54615450 (-)
G20064 NA other downstream 84605 54366784 ~ 54368016 (-)
G19998 eefsec,LOC107568193,LOC107667374,LOC107712058,LOC107584423 other downstream 298527 54117264 ~ 54154094 (-)
AMCG00017343 NA other downstream 307405 54127687 ~ 54145216 (-)
G19950 NA other downstream 418460 54032639 ~ 54034161 (-)
AMCG00017334 NA other downstream 495148 53953294 ~ 53957473 (-)
AMCG00017358 LOC104930492,LOC103358728,LOC105927190 other upstream 73508 54527784 ~ 54535543 (-)
AMCG00017366 LOC105899076 other upstream 184147 54638423 ~ 54651864 (-)
G20193 pfkfb4,LOC104938990,LOC103365889,LOC106565814,LOC107718206,LOC108435436,LOC108254777 other upstream 246294 54700570 ~ 54723791 (-)
G20237 NA other upstream 382821 54837097 ~ 54838491 (-)

Expression


Co-expression Network