G20085


Basic Information

Item Value
gene id G20085
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 54573474 ~ 54582399 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU24949
CAGGGCTTGGTCCCATCCACAGCCAATCAgcgagcagcagcaggaggtcACGAGATACACACTGAACTGCAACAGGGtcagtttattattaaatattttattattattcatgtttttaaaactgtgaAATCTATATtatttcctatatatatataatatatatagttcagttttaaaaaacCTGAACAAAACACACTCCAGCCAGCAGTCATTTAAAAacgattatttttctttcagtaatTCCATCTCTGTATTAATGTACAACCGTTGaaaattacagcattttttttaatgagctaATTCTATTAACAGCcatttttcagaaaacaaacaaacaaaaatattgatcaaaagaaaagtaaaaccaaaaaaaaagaaatgcagggtgacagagggaggagagagagagagaggaagagagaggggtgaTTGAGAAAGCATCAGTGTATTTCTTTGCACtatcagtgtttgttttgagtGAATGTGTCGATCAGCCTCTGTCCCCcccgtgtctgtctgtctgtctgtctgtctggtgaATACTGCCGGTCGGGGGGTCAGACACTGTCAGTGACCGACTCCGACTGTCCCAGTTAGAGTCTGCGCaacacccacactcacactgcaCCCCCCACNNNNNNNNNNNNNNNctctctctgacAGTGTCTCTCTCTAACGGAGACACACACCATCAGAGAGACATCGTCAGAGAGAGACGGATGGAGACAGAGACAAAAGACTCACCCTCTCGAAGTAGAAGAGGTATTTCTTCAGCGCCTCCCTGGCCTGGGCCTGCTGGCTCTGGTTGACGATGTCAGGGTTCTCCTTGTAGCGGCTGCATTCGTAATACTCACTGCCGTGGGTCTTCCAGTCACCCAGACACATCCAGCAGAAAtctgaggaggagagaggggacagGAGAGTCACACCTTGTGTTGAACCTCCCTGCATTGGGCTGG
>TU24950
TGGATAAAGTCCTCTccttattgaattattaatacaatcaaCCACAGAATTAATGAGTAGATAAATAGTTTGTGGAATGAGCACAGGAGACGGGGGCTGTCAGTGCGGCACAGGAAGTCAGTGCGCAGTGAGGCGAGTCTTGTGACACTCACACCAGGAAGAGAGGAGTTTATATCGAGTCAAAGTGCAGCAGCGAGGGCAATAAACACTCCCACAGGCGCTGAATGCAATGCTCATGTGTATAAATCTGTACAGGCATAAACGGTTCTCtatatgcatgcatacatacatacatacatataaagaCACATTCAGACTGGTGTAGTATTCCCTGCTTTGCAGCTATTGCTTCACATTAGTCTTGTAAGGCAAAGTGGCTGAGATCACTCCTCAGCctcaaaaactaaacaaaattacaaaaaaaaagtatcagattaaaaacaattaatctggaaaggcctgtctgtctgttcattCACggctgtctgtctctgcagatTGTTCTGTCATCAGTACATCAGTCTGTCTGTAAGTGCGTGTCTGTCTGCTACTCTGTCAGTAGACCTCTGCTCGTCTATCCGTTTGGAAGTtagtttgtctgtctgtccatgtTCAGTGGATGTTTCTCTGTAGatcagtctctccctctctctgttcacTTGCAAGCCCGTCTGTCCATCCGTGTGTTGCTGGCTCCTCCGTCCCACAGTGAAGAGCTCCTCACATACGGATGGAGACAGAGACAAAAGACTCACCCTCTCGAAGTAGAAGAGGTATTTCTTCAGCGCCTCCCTGGCCTGGGCCTGCTGGCTCTGGTTGACGATGTCAGGGTTCTCCTTGTAGCGGCTGCATTCGTAATACTCACTGCCGTGGGTCTTCCAGTCACCCAGACACATCCAGCAGAAAtctgaggaggagagaggggacagGAGAGTCACACCTTGTGTTGAACCTCCCTGCATTGGGCTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU24949 False 959 lncRNA 0.44 2 54579081 54582399
TU24950 True 970 TUCP 0.47 2 54573474 54582399

Neighbor

gene id symbol gene type direction distance location
AMCG00017361 LOC105927081,LOC106929785,LOC108235569,LOC106517999,LOC103143233,LOC103465231,LOC106950531,LOC107094004 coding upstream 78215 54493577 ~ 54495259 (+)
AMCG00017355 NA coding upstream 104339 54461909 ~ 54469135 (+)
AMCG00017356 NA coding upstream 150842 54389332 ~ 54422632 (+)
AMCG00017348 NA coding upstream 201351 54366736 ~ 54372123 (+)
AMCG00017351 NA coding upstream 207346 54360009 ~ 54366128 (+)
AMCG00017363 NA coding downstream 48239 54630638 ~ 54632572 (+)
AMCG00017364 NA coding downstream 84481 54666880 ~ 54673342 (+)
AMCG00017383 NA coding downstream 106524 54688923 ~ 54690827 (+)
AMCG00017370 NA coding downstream 238737 54821136 ~ 54826385 (+)
AMCG00017382 NA coding downstream 254338 54836737 ~ 54837616 (+)
G20086 NA non-coding upstream 18149 54552140 ~ 54555325 (+)
G20028 NA non-coding upstream 227697 54343402 ~ 54345777 (+)
G20006 NA non-coding upstream 402051 54171215 ~ 54171423 (+)
G19958 NA non-coding upstream 515554 54056860 ~ 54057920 (+)
G19899 NA non-coding upstream 532441 53948758 ~ 54041033 (+)
G20136 NA non-coding downstream 32842 54615241 ~ 54615448 (+)
G20177 NA non-coding downstream 150621 54733020 ~ 54737869 (+)
G20218 NA non-coding downstream 213097 54795496 ~ 54797145 (+)
G20099 NA other upstream 44270 54527752 ~ 54529204 (+)
AMCG00017357 NA other upstream 121420 54423553 ~ 54452054 (+)
G20013 NA other upstream 180883 54307795 ~ 54392591 (+)
G19961 NA other upstream 507287 54064358 ~ 54066187 (+)
G19956 NA other upstream 518299 54054800 ~ 54055175 (+)
G20156 NA other downstream 80912 54663311 ~ 54664526 (+)
AMCG00017381 chchd4,LOC105017180,LOC107099931 other downstream 226067 54808466 ~ 54809106 (+)
AMCG00017369 ssr4,LOC107671948,LOC107737640,LOC108425558,LOC107560913 other downstream 260541 54842940 ~ 54846281 (+)

Expression


Co-expression Network