G20086


Basic Information

Item Value
gene id G20086
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 54552140 ~ 54555325 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU24951
ttttcccatctctTTAGAACAACTCATTCAGGAGTCTTGGAGAAATAAGCAAGAGACTGTTGcaggttttgtttgtctttctgtatcagtccaaaaataaaactgaaaaataattataacaataatataataataataatacaggtgTAAAGTATATTATAATCAACCCTAGAACACAAATGAACTGCAGGAATCACCAGCACACTCAACCGGGAACAGCAGGGAATTCATCTCATCGGCAGGTTTCACCCCCCCagcaaacactttttttttttttttcattaaatctagtttttgttttttgtttttttttgcatttttatatcaaagtttgtttctattttcaaacattgttttattttctttcaaaaaaaaattaaaactttttttgttgttgctttttgtattttttctgttggtTTCAATACAATATTTCTTCAGAGCAGGACGCTGAACCGCGCCTATGTGTAGGCGGGCCGTTAGCGAGTCTGTCCGTCTCTGGGCTGTGGCTCCCTCAGACCTTGccctctctcctgtctgtcaccccccacccccccgccgtACACTGAGACCGTTTAACGTCTGCTAAAGAGAAGGGGTGCGTATATAGTGCATGTTCTCAGCACCCCCAGAAGTGGGACTGTCACCCCTTCTGACCTGACATCTAACCCCTGACCTCTGACTGAGAAGCAGCAGCATCGACTGCCCATCGGTTCCATAACCACAGCGCCACTGCCaggacagactgactgactggacacccGTCcagacaggacagacagacacagacggACGCTCGCTTCCCCGACCCAGCCTGTCCCAGCGTGTGGCGTCGCCTGGCTGCAGGGTGCACTCAGCGGGAGTGTGGGAATTGGGAGGTGTCGGTCAAGACTGGGAGCTcacgtgtgtgcgtgcgtgcgtgcgtatgcatgcgtgtgtgtgtgcgtgcaccGTGAACAGGGGAGTGTATTGAACACGCACGCTTGGGACTGTCCCCCAGTTGATTTTCCATTCAAGCCGAGCCTCTCTCGCTGTGTGTGCTTGCAAAAGACTAAATACTGTGTTGTTTTGCACATGGGCATATATACACTTACACACGCTCACACAGGGCCCCCTGACATCATAAAGTGAGCCCCCCCCAACCACTAACAGCGCTGGTGTGCATCTCTGCCACAGTGCCTCTGGGCATCGATAGGAGCCGTCACCGGGCTTCACCACTGTGTTGGGGAGTGCTCCACTTTATGCCCAGTGTTTTACTTGCAGCTgttccccccccaacacacacacacacacacacaatccagcAGCGTTTATGAATCTTATGAAGTCCAGGGGTCTCCAATACAGTACAGTGGGgtctcccccctcctcccaaattcatacatacagaaaacagagagagagagggagagagagagacggttTGAAGTACAGAATGGAAAGGATTACAGAAAGAGGTAGAATGTGTGGAGACAAGGAGAGAATAGCTGACAGAGtgagaactgagagagagagagagagagagagagagagagtgtgtgagtgtgtgtgtgtgtgtaaggaaGTCGGAGAGCAAGCAtgaatgtgtctgtctgtcatctTATTGGTCTTTTggcgattgtgtgtgtgtccgttgATGTCAGTCTATCAGGGTGTCTGTGTCCAAGAGTAGACACGGGTGGAGCTGTGCACAGGGTACCTCGGTGTGCACGTGTGTATCAGTGTCAGAGCATTAACTTGAGTTTGAGTTGGTGCTTCAGTGAGAGcgtgtttgtttgcatgtccGTGTGAGTGCgagagtcagtgtgtgagtgtgccatcagtctcagtgtgtgtccgtctgtgcgggtgtcagtgtgtgagtcagtgcGCGAGTCAGGGAGTGCGTGCGTCAGTgagtgcgtgcgtgcgtgcgtgcgtgcgtgcgNNNNTGAGTGCGTGTCAGtgagtgcgtcagtgtgtgagcgtgtgtcagagtgtgtgagcgtgtgtgtgagtgcgtgcgCGTCAGGCAGAGTGTCAAGTAAGGCACAGGGTCAGTCCCTCAGATCCATGCTGGAGCCGAACAGGGCCACCAGCTGCTCCTCATAGTGTGCGATGTTCCTCTGCATGATTTCCTTACAGGAGCCCAGCAACCTCTCGAACGCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU24951 True 2149 lncRNA 0.50 3 54552140 54555325

Neighbor

gene id symbol gene type direction distance location
AMCG00017361 LOC105927081,LOC106929785,LOC108235569,LOC106517999,LOC103143233,LOC103465231,LOC106950531,LOC107094004 coding upstream 56881 54493577 ~ 54495259 (+)
AMCG00017355 NA coding upstream 83005 54461909 ~ 54469135 (+)
AMCG00017356 NA coding upstream 129508 54389332 ~ 54422632 (+)
AMCG00017348 NA coding upstream 180017 54366736 ~ 54372123 (+)
AMCG00017351 NA coding upstream 186012 54360009 ~ 54366128 (+)
AMCG00017363 NA coding downstream 75313 54630638 ~ 54632572 (+)
AMCG00017364 NA coding downstream 111555 54666880 ~ 54673342 (+)
AMCG00017383 NA coding downstream 133598 54688923 ~ 54690827 (+)
AMCG00017370 NA coding downstream 265811 54821136 ~ 54826385 (+)
AMCG00017382 NA coding downstream 281412 54836737 ~ 54837616 (+)
G20028 NA non-coding upstream 206363 54343402 ~ 54345777 (+)
G20006 NA non-coding upstream 380717 54171215 ~ 54171423 (+)
G19958 NA non-coding upstream 494220 54056860 ~ 54057920 (+)
G19899 NA non-coding upstream 511107 53948758 ~ 54041033 (+)
G19887 NA non-coding upstream 590302 53959463 ~ 53961838 (+)
G20136 NA non-coding downstream 59916 54615241 ~ 54615448 (+)
G20177 NA non-coding downstream 177695 54733020 ~ 54737869 (+)
G20218 NA non-coding downstream 240171 54795496 ~ 54797145 (+)
G20099 NA other upstream 22936 54527752 ~ 54529204 (+)
AMCG00017357 NA other upstream 100086 54423553 ~ 54452054 (+)
G20013 NA other upstream 159549 54307795 ~ 54392591 (+)
G19961 NA other upstream 485953 54064358 ~ 54066187 (+)
G19956 NA other upstream 496965 54054800 ~ 54055175 (+)
G20085 NA other downstream 18149 54573474 ~ 54582399 (+)
G20156 NA other downstream 107986 54663311 ~ 54664526 (+)
AMCG00017381 chchd4,LOC105017180,LOC107099931 other downstream 253141 54808466 ~ 54809106 (+)
AMCG00017369 ssr4,LOC107671948,LOC107737640,LOC108425558,LOC107560913 other downstream 287615 54842940 ~ 54846281 (+)

Expression


Co-expression Network