G20131


Basic Information

Item Value
gene id G20131
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 54607363 ~ 54607614 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU25009
TATTTGTGCTTGCTCCGGCAGCACATATACTAAAATTGGAACGATACAGAGAAGATTAGCATGGCCCCTGCGCAAGGATGACACGCAAATTCGTGAAGCGTTCCATATTTTTGTcaattttttgaaaaaaaaaaaaaaaaaaattggcaaaaccgcaataaaaatggaaaaagacgcaaaagcaaacaacaaagaaaagaaaaacgcaaaaactaaagaaaagacacagaaaaaatGCAAACGCAAACTCGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU25009 True 252 lncRNA 0.35 1 54607363 54607614

Neighbor

gene id symbol gene type direction distance location
AMCG00017368 NA coding downstream 12006 54589059 ~ 54595357 (-)
AMCG00017365 arih2,LOC102785176 coding downstream 19838 54580070 ~ 54587525 (-)
AMCG00017359 slc25a20 coding downstream 29270 54572425 ~ 54578093 (-)
AMCG00017362 prkar2aa,LOC108265715,LOC107679546,LOC107591783,LOC107711958,LOC105906428 coding downstream 36805 54570271 ~ 54570558 (-)
AMCG00017360 prkar2aa,LOC103384990,LOC107669629,LOC107717523,LOC107556498,LOC105906428 coding downstream 48768 54555357 ~ 54558595 (-)
AMCG00017367 qars,LOC107675620,LOC107693419 coding upstream 47221 54654835 ~ 54661911 (-)
AMCG00017379 NA coding upstream 86270 54693884 ~ 54701627 (-)
AMCG00017380 NA coding upstream 96333 54703947 ~ 54704219 (-)
AMCG00017375 NA coding upstream 117991 54725605 ~ 54729120 (-)
AMCG00017374 mapk3 coding upstream 125460 54733074 ~ 54748372 (-)
G20122 NA non-coding downstream 27645 54579265 ~ 54579718 (-)
G20118 NA non-coding downstream 96875 54510236 ~ 54510488 (-)
G20116 LOC106929785,LOC108235569,LOC103465231,LOC103143233,LOC106950531,LOC105927081,LOC106517999 non-coding downstream 109325 54494935 ~ 54498038 (-)
G20078 NA non-coding downstream 153087 54452621 ~ 54454276 (-)
G20066 NA non-coding downstream 236697 54369752 ~ 54370666 (-)
G20137 NA non-coding upstream 7632 54615246 ~ 54615450 (-)
AMCG00017358 LOC104930492,LOC103358728,LOC105927190 other downstream 71820 54527784 ~ 54535543 (-)
G20064 NA other downstream 239347 54366784 ~ 54368016 (-)
G19998 eefsec,LOC107568193,LOC107667374,LOC107712058,LOC107584423 other downstream 453269 54117264 ~ 54154094 (-)
AMCG00017343 NA other downstream 462147 54127687 ~ 54145216 (-)
G19950 NA other downstream 573202 54032639 ~ 54034161 (-)
AMCG00017366 LOC105899076 other upstream 30809 54638423 ~ 54651864 (-)
G20193 pfkfb4,LOC104938990,LOC103365889,LOC106565814,LOC107718206,LOC108435436,LOC108254777 other upstream 92956 54700570 ~ 54723791 (-)
G20237 NA other upstream 229483 54837097 ~ 54838491 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_038363 CABZ01071845.1 non-coding NW_003336877.1 KN149790.1 1312 ~ 1418 (+)
rainbow trout (Oncorhynchus mykiss) G372618 LOC105030512 unknown NC_048569.1 CM023223.2 16870434 ~ 16882185 (+)
striped catfish (Pangasianodon hypophthalmus) G357553 NA non-coding NC_047618.1 CM018564.1 18685124 ~ 18688610 (-)
mexican tetra (Astyanax mexicanus) G170100 NA non-coding NC_035915.1 CM008318.1 25721664 ~ 25721874 (+)