G20177


Basic Information

Item Value
gene id G20177
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 54733020 ~ 54737869 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU25057
TTTTTAGAGATGTTTAAaaaatttatttttggaaaaggaccagaaaaacaaacaaacaaacatataataataataataataataataataataataataataactctctGCAGACAATGGATCTGTGATGCCGTTGAAGAGTCTGCTCAGTGCTGGGGGGCCTGGGAGGGCTGTACAGTATTTTTGGGGGGGTAAGGTATTTACACCATCATCTGatcaccccccccccgccccccattCGAGAGGAAGCTGTTtgttcctctccctccctggctCTTCCTGCTTTCTCTCAGGACTTCCCTCCACCTGTTGGCTGTTACAGACAGTGCTGCCCCCACGGCCTCCTGCCGCCTTCTTCCGCCTCTTGTTGAGCAGCGGGTTGCTGGACGTGTCCAGGTCTTTGATCTTCACCTGGTCATAGTCGACTCTCATCGTGGCCAGAGCGCTGGTCATCTCCTCCTGcggacacacacagtacacaattatacacaattatacacaatacacaattatacacaataatacacaatacacacacactacagagtGCTGGTCATTTCctcctgcagacacacacaatacacaatacaatatagttctttttcttaaatacatCCTCTTCATGACAGGGATGTATTAATTCTCACCCGTTCCCTCCCCTGCACACAGCCATCTGCTGCCACCCAGTGGATACACAGTGTAACTGCGGGAGGTGAAGCACGTTCACAGGACTGGGCACCGTTCGTgtttgggagagagagactcaccttcACATCGTCCCACATCTCCCTGTCCTCTGTCAGGACACGCGTGGTGTGCAGTGGGGTGGGCGGCACCACCATCGATTGCTGGAATAACAACACAGCGCTGGTCAGACACACTGAGATattgatacactgacacacagtgaCATACTGAGACatactgagagacactgagagactgacacactgagacacagtgagacacactgagacatactgagagacactgagagactgacacactgagacacagtgagacactgagagactgacacactgagacacactgacacactgagagtCACTAACACACTGAGagtcactgagacactgagagacgCTGACACACTGAGGCACACTGGGACACATTGAGACACTCACTGTGATCCAGGGGTGGTTCATGAACTGTGAGATGCTCATCCTCTCATTAGGGTCAGTCTTCAGCAACTGGTGAATCAACAGCttagctggagagagagagagttagttAGGagcaacaatacaaataaacgggcctgctgtgctgtgctttaTTGTGCTGCTTCATGTCTTCTTAAGACATCAACTTAATCTTTCTGGAGTCTGGACTACAGAAGAGACACAcgcactcaaacacacacacagacacactcgcAGCTCCGGTCCAGCACGTACCCTCCTCAGACACTTCGGCCCACTCCGGGGTGGGGAACTCGTACTGGCCCATGCGGATCCGCCGCTTCATCCCAGGAGAGATGGCCTGGCCGGTGTTGGAGTAGAAGGGCGGGAACCCACacagcctggagagagagagcgagagagagagagttacattgttaaatattgttacattgttggttacatctatatatttttgtttttattattatttatcttcttattttctaataatgctttggcaatacaaatgtataactgtcatgccaataaagcaatttgaatttgaatttgagagagagagagagagagagagagagagagggagaggtggcaTGAGAGTGGACTGAACATCGACCTGTGAGacttgttgtgtgtgtgtgtgttgtgtgtccagtgtgcagATCTGTAACACTCACAGGATGTACATGATCACTCCCAGAGACCACATGTCACAGGACTTGTCATACTTCTCTGGGCCGAGCACCTCAGGAGCTgaaacagacatacacacacagacacacaaaacatacgacacacacacacacaaacaccacacagacacagacgcccagaaacacaaatgtataaacaacaAATGAATTCATAGATGttacaaatgtacacatttgtgAATAgcagaaagacacagacagagggacagacagagacgaATCACCAGGAGAgaaacactctctctcacacacacactcacacacacactcacacacacactcacacacacacaacacagacacacacacacactcacacacacacacacacacaacacagacacacacacacacacacacacacacacaaacacacacacacacagacacacacacacacataacacagacacacacacacagacacacacacactcacagacacacacacaacacagacacacacacacacactcacaaacacacacacacacagacacacacactcacacaacacagacacacacagacacaNacacactcacagacacacacacaacacagacacaacacagacacacacacacagacacacacacagacacacacacacacactcacacagacacacagccgcAGACAGTCAGAGTGGCACATGCTGAGTGACACACTGTGACAGACAGATGCTCAGCCAGGCGGACGGACGGACTGCGGTGCTGAGTGTCTCCTGTACTGACCCACGTAGTACGGGGTGTAGCAGGGCGTCTGCAGGGAGTTGTGCAACGTAGTCTCCTTGGCGAAGCCGAAGTCTGTGAGCTTCAGCACCCCGTTGGTCTCCTTACTGGTGTAGAGCAGGTTCTctggctgagagagagagaccgctTTACAAAACACTTGGGTgaactaaatacaaaaacatggaaTCAGAGTCAAAAACAAACTCACATAAAACTTTACacaaaaaagagaaggaaattaGAAACCTTTCTGAGTGAAGAGGAGCGGCAGGAAATATAATCTCCTGATATTGTGGCCCTATAAGCGCTTTAAACAGCAGCTCCACACTGGTGTTTACTTAGTGTGTCTTGTTTCGTAAATGTGGCATTGTGGCCGCAGTCTCtcacacagctgtgtgtgtctcagcagggacacacgcacccggggacacaaatggaaattgggcttcaaggcattcaagacagaaaacagaagacacttcttcacacagagaggcgtcacaatctgaacaaactccccagcgatgtggctgaagagacaatttgggaacattcaaaaacagactggataggatccttgatcactcagttattaatggacaccaaacgagcaggatggggcgaatgggctcctctcgactggacacttccttatgttcttatgtcctgTCCTGCGCTCCACAGGTAAACACAGAGTCTCTGACACCCAGTTGAAGGCCGTTAAAAGCGCTGTTCTCAGCGGAGGCTGCATCTGGTGCAATATACTCTGGAGTCTGGAGTTATCTTAAAGACACAATCTTGTCTGCAGGAGACTTGAAGTTCCTGAAGTCGGTcggtctgtctgcctgtctgtccgtctgtctgtctgtcccctgCTCCTCACCTTGACGTCCCTGTGTGCGATGTTCATCTGGTGCAGGAAATCAATGGCCGTCCCGATGTCCCTCATGATCTCTGACGCCTCTGAGGAAACAAAGCAGCACTGtcgcactgac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU25057 True 3608 lncRNA 0.48 3 54733020 54737869

Neighbor

gene id symbol gene type direction distance location
AMCG00017383 NA coding upstream 42193 54688923 ~ 54690827 (+)
AMCG00017364 NA coding upstream 59678 54666880 ~ 54673342 (+)
AMCG00017363 NA coding upstream 100448 54630638 ~ 54632572 (+)
AMCG00017361 LOC105927081,LOC106929785,LOC108235569,LOC106517999,LOC103143233,LOC103465231,LOC106950531,LOC107094004 coding upstream 237761 54493577 ~ 54495259 (+)
AMCG00017355 NA coding upstream 263885 54461909 ~ 54469135 (+)
AMCG00017370 NA coding downstream 83267 54821136 ~ 54826385 (+)
AMCG00017382 NA coding downstream 98868 54836737 ~ 54837616 (+)
AMCG00017371 wdr82,swd2,LOC107712117,LOC106565976,LOC107584451,LOC107673495 coding downstream 118957 54856826 ~ 54863910 (+)
G20136 NA non-coding upstream 117572 54615241 ~ 54615448 (+)
G20086 NA non-coding upstream 177695 54552140 ~ 54555325 (+)
G20028 NA non-coding upstream 387243 54343402 ~ 54345777 (+)
G20006 NA non-coding upstream 561597 54171215 ~ 54171423 (+)
G19958 NA non-coding upstream 675100 54056860 ~ 54057920 (+)
G20218 NA non-coding downstream 57627 54795496 ~ 54797145 (+)
G20156 NA other upstream 68494 54663311 ~ 54664526 (+)
G20085 NA other upstream 150621 54573474 ~ 54582399 (+)
G20099 NA other upstream 203816 54527752 ~ 54529204 (+)
AMCG00017357 NA other upstream 280966 54423553 ~ 54452054 (+)
G20013 NA other upstream 340429 54307795 ~ 54392591 (+)
AMCG00017381 chchd4,LOC105017180,LOC107099931 other downstream 70597 54808466 ~ 54809106 (+)
AMCG00017369 ssr4,LOC107671948,LOC107737640,LOC108425558,LOC107560913 other downstream 105071 54842940 ~ 54846281 (+)

Expression


Co-expression Network