G20237


Basic Information

Item Value
gene id G20237
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 54837097 ~ 54838491 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU25136
gtcatgccaataaagctccgTCAATctccacacacgcacacaccgagtcacacagacacatcgagtcacagacacacgcacacacacacaccaagtcAGGACCAGGAAATCATGGATAAAATCATAAATGAGTACGTTAATAAACAGCAAgacttgttttttatatatagaagcAATTTTTActaaaaaatatagatatttatttcttacataTGTACAAGCAAGCGTTTTTGAATTATAAAATGAGACCATGTGACCACagcttctggaaaaaaaaaatcttgtttacAAAGACACTGGGCACTGAGGATAGAAACACTGTGTCCAGCACTGACCGGCCCAGAGCCACACGCacgagtctgtgtgtgtgagtgagtgtgtgtataagCTTTATAATAGAGTGTCTGTGCGAGTGTGTATCTGTTATTGAGTGTCAATGAgtaattgtgtctgtgtgtgtctgtgtgtgtgtgtgtgtgttcagtgtgactgtttttcagttgttcaGTGCATGAGAGTGAATGTGTGCTTGTAGCCgtgtgtattattgtgtgtaGTGCTGGTCTCAGTGTGcgtgttattgtgtgttttgcGTCTGGGCCTGGTTGTGGTCTTGTGTGTCCTCTGTTCCGGGGACACACCCCACTCTGCTTTGGAGCAGAAAAAAAGCCCACCCCCTTTTCGGAAACATCGGATCCGATTGGCTGCCCCAGGTAGTGGTGGTGTGGGAGTTGTTTACAGTTATACTGATTGGCCAGAGAGGGCTTCTGGGAATGTCCTTTGTTGCACCTTGTTTCACTTCCTATTCTGCCGCATGccccctctcctcctcatcctctccTCGCTCTCAGAGGAGGAAGGGGTAGTCCTGCAAGTACTGCTGCAGCCGGTGGGGGAGGGGCAGCTGCAGAGGCTCGGCGGTCAGCCGGTTGATGGCGAGCCGCGTCAAGTGCTGCAGCGAGGGGAAGGTGTCCCGGCGGTGCAGCGGCCGCACCAGCTTCAGCAGCACAGCCGAGTCCCGGCACTGCGCCGCGGCATGGGAAGAGGGCGGGCTGGGCGGCCTGGGCACCGGGAGGGGGAGCCGCCGGTCCTTCCCCTCCGCCTCCTCCCCGGCCCGGCTGGAGCCCACGTAGTGCTGCACCAGGCTGGGCACGTTGGCGAAGGCCAGGATGCGTGGCTTGGCCAGGCAGCTCGAGTCCAGGCGGAAGCGCCCGTGGCTGTACTCGATGCGCACATTGGTCGGACCGCGCAGCGTCTTCACCGACAGTGTCAGCATGTACAGCGAGTGGCTGCTGTCCCTCACCAGGAAGGTGCCCTCCTGCGCCCGCTGCAGCTCCGCCCGTGCCTCGCTGGCCGTGATCGCGCCC

Function

GO:

id name namespace
GO:0005248 voltage-gated sodium channel activity molecular_function
GO:0005272 sodium channel activity molecular_function
GO:0015081 sodium ion transmembrane transporter activity molecular_function

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05410 Hypertrophic cardiomyopathy
ko05414 Dilated cardiomyopathy

RNA

RNA id representative length rna type GC content exon number start site end site
TU25136 True 1367 TUCP 0.55 2 54837097 54838491

Neighbor

gene id symbol gene type direction distance location
AMCG00017372 sec61a1,LOC107384934,LOC102228108,LOC106518493,LOC103023094 coding downstream 16922 54813893 ~ 54820175 (-)
AMCG00017377 LOC107672588 coding downstream 31734 54797011 ~ 54805363 (-)
AMCG00017378 NA coding downstream 42315 54791836 ~ 54794782 (-)
AMCG00017373 dnah1 coding downstream 48019 54750483 ~ 54789078 (-)
AMCG00017374 mapk3 coding downstream 88725 54733074 ~ 54748372 (-)
AMCG00017376 NA coding upstream 8403 54846894 ~ 54853690 (-)
G20137 NA non-coding downstream 221647 54615246 ~ 54615450 (-)
G20131 NA non-coding downstream 229483 54607363 ~ 54607614 (-)
G20122 NA non-coding downstream 257379 54579265 ~ 54579718 (-)
G20118 NA non-coding downstream 326609 54510236 ~ 54510488 (-)
G20116 LOC106929785,LOC108235569,LOC103465231,LOC103143233,LOC106950531,LOC105927081,LOC106517999 non-coding downstream 339059 54494935 ~ 54498038 (-)
G20193 pfkfb4,LOC104938990,LOC103365889,LOC106565814,LOC107718206,LOC108435436,LOC108254777 other downstream 113306 54700570 ~ 54723791 (-)
AMCG00017366 LOC105899076 other downstream 185233 54638423 ~ 54651864 (-)
AMCG00017358 LOC104930492,LOC103358728,LOC105927190 other downstream 301554 54527784 ~ 54535543 (-)
G20064 NA other downstream 469081 54366784 ~ 54368016 (-)
G19998 eefsec,LOC107568193,LOC107667374,LOC107712058,LOC107584423 other downstream 683003 54117264 ~ 54154094 (-)

Expression


Co-expression Network