AMCG00017384 (LOC106911887,LOC104963986)


Basic Information

Item Value
gene id AMCG00017384
gene name LOC106911887,LOC104963986
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 160054 ~ 351786 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017384
atggccagtggaaatgggaGGAGCACGGTTACTAATATCCTGGCACAGCATCCGGCTACAGGAGCAATTGCATTGATGACTGAGGGCAGAGAGCTGATTCTGGAGGTTGAGCGCAATCATCAGCTGCTGGGCCAAGATTTCTCAGAGACCCATTATACTAAGGATGGGATACCAGTGACAATCAAGCCAAATTACACATTAAAGCAGGCAGGTACAATGTGTCGGGAGCCAGCAGGGGCCTGTGACCTGCCTGAGTACTGCACCGGAGCCTCCCCCTACTGCCCTTCCAATGTCTACTTACTCGATGGCTCTTCCTGCCTCTATGGGCATGCATACTGCTACAATGGCATGTGTCTCACCCATGAGCAGCAGTGTCTCCAGCTGTGGGGATACGGTGCCCGACCAGCTCCTGATGCCTGCTTTCAAGATGTGAATGCTGCTGGGAATGCCTATGGGAATTGTGGGAAGGATGGACAGGGGAATTATATGAAGTGCGAGAAAAGTGACGCAAAGTGTGGTAAGATCCAGTGCCAGAGTGCTGCCAAAAAGCCAAAGGGAACCAATGCTGTTCCCATTGACACCACCATCCGCTTCAATGGTGTGGAGGTGAAGTGTCGAGGGACCTTTGTCTACACCACCCAAGAGGGGGATGGTGACCTGCTAGACCCAGGGCTCGTTATGACAGGGACCAAATGTGATCGCCGCTGTCAGAATGCATCTTTTTCTGAGCTGGAAAGCTGCATCTCCCAGTGTCACAATCATGGGGTGTGCAACAGCAACAGAAACTGCCACTGTGCTGCTGGTTGGGCTCCTCCATACTGTGACAAGCCTGGCCTGGGGGGAAGTTTGGACAGCGGGCCTGTCCAGTATGACAGTCAGCGGGGTCTTGTGGTGGGTCTGCTTTTTGCCTTCCTGGTGGTCCTACCAGGAGTGCTTACAGTCTTCTACTGCTACAAGGTCAAGACTTCCCTCTACCACAAGTGGTATTCCCAGAAGGACAAGGGCTCCCTCCCTCACACCGGTAAGGAGGCCCTGCCCCTGCGACCACCTCCTGGCCCAACTGGCTCTCAACCTGTCAATATTGTGCGCCCCATGCGCCCTGCTTCCTCCCCCAATGCCCATCCCACCTCAGAAGCGTTGGGCCTCGATctgctgctgcaggagaggaGAGTCAACTACCTGCAGGGGTCCCGAGCCCATGCCCATGGCTGGTGCAGCAACTCCTGTGGACAACAGTGA
>TU112073
CTCACACTGGAGAGCCGTTAGTGGTCTCAGCTAGCTAGCGAGAGGAGAGTGGGATAACGGTACGCGGAAGAACAGGGATGTACaccaaacacagacagaaaaaaaataaaatcttttcaGCAGAATGTGGACATGCTGTAATATTAGTTCTCCTTCTACTACTGAACAACATACTGGAAACTGTGAACGGAGACATCAGAGAACAAGGAGACATCAGAGGACAAACCGTCATTCCATACTGGGTCTCCTGGGGAAGGACCAAACGAGCAGCTGGGGCACAGTTTCAGGCACAGCATCCGGCTACAGGAGCAATTGCATTGATGACTGAGGGCAGAGAGCTGATTCTGGAGGTTGAGCGCAATCATCAGCTGCTGGGCCAAGATTTCTCAGAGACCCATTATACTAAGGATGGGATACCAGTGACAATCAAGCCAAATTACACAG
>TU112074
aatcagcaggggatcaaatacttttttccctcactgtaagttattgacaatatttttaatttcattttatcattgttgttattgtcttCTTTCTGACGTAGGGGCCTTATCGTCCTAAATGTTAATGACAGCTACTACCTTGAACCAATCCGAGGGCTGGACTCCATCTATCACATGATTTATAGGACAGAACACCTGCCAATCAAGAAGGGGACATGTGGGTACCACCATTCACACCACAGGGGCATTCTGACTGAGCTTACCAGCCTCATTAAACCTTTGCATCAAAGGGTGAGACGGAATGCCTTTGGTACAACCAAGTATATGGAGCTATTCATAGTAGCTGACAATACACTGttttgttttctgtac
>TU112076
CATCCAGGGGGTACACCAGGCACACGTGTATGCAGCCATGGATGTTGAAGGGGCCTTATCGTCCTAAATGTTAATGACAGCTACTACCTTGAACCAATCCGAGGGCTGGACTCCATCTATCACATGATTTATAGGACAGAACACCTGCCAATCAAGAAGGGGACATGTGGGTACCACCATTCACACCACAGGGGCATTCTGACTGAGCTTACCAGCCTCATTAAACCTTTGCATCAAAGGGTGAGACGGAATGCCTTTGGTACAACCAAGTATATGGAGCTATTCATAGTAGCTGACAATACACTGttttgttttctgtac

Function

NR:

description
PREDICTED: disintegrin and metalloproteinase domain-containing protein 19-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017384 True 1239 mRNA 0.55 12 160054 276824
TU112073 False 444 TUCP 0.48 4 245930 351786
TU112074 False 372 lncRNA 0.41 3 207586 218550
TU112076 False 321 lncRNA 0.47 4 207586 219958

Neighbor

gene id symbol gene type direction distance location
AMCG00017387 NA coding upstream 8669 360455 ~ 470430 (-)
AMCG00017391 NA coding upstream 584095 935881 ~ 936676 (-)
AMCG00017393 pcgf1,LOC107589114,LOC107710472,LOC107660820 coding upstream 923446 1275232 ~ 1289433 (-)
AMCG00017394 LOC106604596,LOC105028255,LOC106611619,LOC103363938,LOC104951404 coding upstream 1086742 1438528 ~ 1447581 (-)
AMCG00017395 tlx2,LOC106611621,LOC106604594 coding upstream 1203742 1555528 ~ 1561186 (-)
G89870 NA non-coding upstream 33885 385671 ~ 447085 (-)
G89883 NA non-coding upstream 111422 463208 ~ 463423 (-)
G89885 NA non-coding upstream 150381 502167 ~ 528797 (-)
G89892 NA non-coding upstream 281130 632916 ~ 633178 (-)
G89893 NA non-coding upstream 339784 691570 ~ 691851 (-)
G89804 NA other downstream 54169 105685 ~ 105885 (-)
AMCG00017418 NA other upstream 2249997 2601783 ~ 2615562 (-)
AMCG00017426 NA other upstream 2359516 2711302 ~ 2841894 (-)
G90400 NA other upstream 4190989 4542775 ~ 4544760 (-)
G90501 NA other upstream 4806598 5158384 ~ 5221021 (-)
G90502 NA other upstream 4870687 5222473 ~ 5223047 (-)

Expression


Co-expression Network