AMCG00017387


Basic Information

Item Value
gene id AMCG00017387
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 360455 ~ 470430 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017387
ATGGATCGGGCAGGGTCGCAGCCTGTAACTTCTGTGCACCGTGGAGGGGCAGGCCTGCCGGGGCCTGGTCAACTCCAGCTTTACCATCTCCCTGCTACAACCCGGTACCATCACCATCCCGGAAGCAACGTGGAAAGCCACCTCCTTTGCTTCCTTGGCAACAGCTCCATGGATCAAATAGAGACCCAGTGCGCAAGCGGCAATCAGTTACTGAGTGTCAACATGGAGCCACGGGCAGAAATTGACAACAGGACGATTGTCACAACACCTCCTGCTTCTCGGCTCATCCAGGTCGAGGAGTTGAGGAGCCAGAGCAGCAGCCCTGGTAGTGGGACACACCTGTCCAGCACCAGTGGAGTATCTCTGGGGGAGGCCATTGTGCAGAGGGCCAAGCAGGGTATGGAGTCATGGTACCAGTTGCCAGCAGAGGAGGATGTGAGCAAGCTGACAGAAACTTCTGTGAGCAGGGTGGGTCTGGCCCCATTGTCTGCTAAGGAGCATGCAGCTTGTGACTTCCCCTCCATACAGGAAGAGGTCACCATGACTGGGGATACAAGACTGCACCAGACCGAAGGATGGTCCCATGCTTCCCCACTGGAATTTCAAGATAGCCGTCTCTCACCTGCTCTTCCTTTGCTGCCTGTGCATTCTTCAAAAACTCAAAACATGGGTGATGATACCTTCTATCAACAGACAGAAGTGGAATTTGCCCCCCTCAGGGAATCTCCAGATGTTTCTGTCATGTCTGCAAGGATCACAAGACCCCTCCAGATTAGTGATGCTGTGCAGCTTGTGATCACCGAAGTCTCTGTGGAAATTCCCAGTGACCATCCCTCATTGTCCCAGCATCCACTGGCAATCACGACAGCTACTGCTGAGGATGCCAGCAGCAACTGCTCTTTATCTCAACATACTCTGTCACATATGTCTTTGGATGAAGGTATAAGCAATTTTGTCAAGATCTCAGAGGAGGAGATGGAAGGGTACCAACTTTCAGGACTTAAAGAATCCCAGTTTGAAGCTTGTGTACAGACTCGGGGGGATTCTGCTGGGGAACAACATGCCTCTTCTGTTCCTGATTACCAAGAGAACCTGTTCAAACAATTGCTTGAGGATGAAGCCTCATTTTTAAGCACTGATTGTCCTAATCCTCTGTTACATGAGCTCCTAGAAAAAGATGTTGGGTTAGCAATTAGTGGTGCATTTCCATATGCCTCTGGAAGTTCTACAAAAAGGACTTTATCTGGCAATGAATCCCAAAAAGATAAAGCAGTGAACAAGGACCAAGATGTAACTTTGTCTGAGAATCCTGAGAATCCTAGAAACCCAGCAGAGCAATTGGAAGCATTGGTAGTACCACAGCTTGATCTTTCTAGAAGCTCTTCAGATCAGGAGTCTTTAAGAGGGTCAAGAAATTTCCCCCCTGGAGGAATTTCACTTTTGTCTCCAAAACTCATAGAAAGTGCTACAGACAAAGCATTGAGGCAATCTGAACTGTGCAATATTACCACCAGGTCTTGTCGTACCCAGTCAGATGATGAGTTGACAGAAGCTCTCCGTAAGCAGCTGTGTTCTGAGATCTTGTCAAGTCGCCATTTGAAGTCTGGTTCCAGAAAAGCACAGAAAGAAAGTGATCCTACACTGCAAAGCAACCAGCAAGGCACCCCAAACACTGGCTCGCTGGGAACCTACAGTGGAAAAGACAGCACCATTATTGAAGTGCCCACTGGGATTAGGAAGAATGAAATTACATCATCATCAGGATTTAGTTTTGAACGAGGACATAAGGAAAGAGAAATGTCATCTATGGAGAATCGTACAGCTGTGGATGGGTCTCTTTTAGGATGTATTGCTCAGCCAGTTTCTCAGTCAACCCCAGGCTTGTTTTCAGAGGTACTTCGTGCCACTGTTCAACCACCGTATAGGAAGCTGACTCCAATTGAGTTTAACCCTGAAGCTACTTTACCCACAGAAGATGTACCCCACAGCAGATCCTCTAAACTTCTTgcttctgcaattaacacagaTCTAACAGAAGCATCTAGTCCAATGACCTATAAGGACAGTTTAAATGCCTGTTTGAAGAAAACAAGGAAGATTCAGTCCTTACCCACTCTGAATTATATGGAGAAAGTAGGAGCCTGGAATGTGACCCAGTATACAGGTCAAACTTTTTTTGACAACTTGGCTCTGAAAGGCTTCACTGGGGTTTCTCCCAAGAAGAAAGCTTTTAATGCCATTGCTGActcattaaataatatttttaccCAGCAAAGAAGTGAAAAATCTCCAACACCCTCTGCCTTCATTGTGAGCAATCACAGCCCCAGAAGGACTCTAGCTGCTTCGTTTTCTGGGACCTCTTCTCCAGCTAACGATGCTTGTGGCCCCACTGGAGGTTTAAAATCCTCTCCCATAGGCAGGTCCATGTCTTATACTTCATTAAGTACCGCAAGCAAAGAAATTCAGCAAGCTGGAGCTTCTCAAAGTGAGAAAAAAGAAGCTTTTCAGGCTGAGGTTGTCCATGGAATGGGGTGTGCTTCAGCAACAACAGGAGCTAACAGGTCCTTAGACCAAGACTCATCCTCACAGATCCATAAAGCTTCTGGGAACTCTCCACATCCTAATGATAGGAAGAGCATTCCTAATAGCAGTAACATTCAACCTCAACCAACAACTGTTTTATTGGAGAAGTGTTCCCCACTTGATGAAGAGAAAAGTCCTGAGGAGGGAAGGAAACCAGGAAACCAGGAATTGCAGAGTTCAGCCCAGCCCCCATCTCTAATCAGCCTAGATCGTTTCAGTGATTTGTCTCCAAACCATAATTTCAGCAGCACCCTTGCAAGTTCTCAGGACACAAGTTGTTATGGGGATAGAAGGCGCTTAGCTTCAGCAAGAGCAGTTTCAGCCTCTTCCATTGTTAGCTTGGAAGTTGACAACTATGCTCCGTATTGGGTCACCAATCCTTCAACACCAGCGAAgaataaagatttaaatattGAGGAGAGAATTCcgGTGTACCTTCATAATCTTGGAATTGACCAGTCGCCATCAACCATACTAAATCCTTTTCTAGCAAGCGGGCCAATAAGAGAACCAGAATTTTCACCAACTGATCTTCGCACCATTAAAGGTTCAACAGGTACCCCAACAAGAAGCACCCAGCCTTCAGAAGGTGACAGTCTTACTAAGGGAAAATTTTCACTGTCTAGCTTATTGTCTGTGAATTCTAGTCTCAGCATGTCCATTTCGGTGAGCTCTAATGCTGACCACAACATTTCTTTGTGCAAAGAGCTGTCTGTGCAGAATGTGGCTGGATCTTCTTCAGACAGACCTGTCAGTCAGTGCAGTCTCCAGGCTGCTTTCCATCCACTGGACCGGTCATTGGATCTTCCAGTGCAGCTGACTTATGATGACCGCACAGATTGTATCAGTGCTGAAACTTTCTCACTTCCAGAGGACCGGAATCAACCTTTGAACGAAAGCAGTTTGTCACGTGTTGCAAAACATATCCGTAAGTTTCAGTCCTGTGAACTCTCTGTCACTCCAGTCAGTCTTTCCTCCACTTCTTTAGCTGACGACGAGCACCACACCAAGACCCATGAAGCAGATAATGAGGAGTTTGCAAAGGTGACTGATGCTACACCTACTCGCAGCCTGGAACTAGGGAATGACTCTTTTGTCGGGTCCAAAACCCTACAGGAGATCCGAAAACTTTTGGGCAAGGCAGACAGCCTTGTGTCCGGAAGATCCTCTTTTTCCTCCCCTTTTGCATCCTTGAGGGGATCTGTCAACTTGGCCTCGTTTCTTCACAACAAGTCAGACAGTTTCCAGGactatttttcttcttctacagAAAACCAGCAGAGCCTGTTGTCGCTGCTTTGGAAAAGGTCATCTTCTGATTCTATGCTCACATTGGATGGACTGAGAGATGACTCCTTTCAAGGGGAAATCCAACCATCCAAGACGCCAGTCACCAGATCAGCCATCATGACAGACCATGACCGATTCTCCATAGACAGGAATTCTGTTGGCAACGCTTCGAAGCAGATCACTCAAGAGAGCACACGCTCATCTTTCCCTGATAAGAACGTCGGGCGGTCTGAGCCAGAAGGCTGCAGTGAGGGTACTCAGGATAAAGTGACCCCTGTGCTTTTTCCTACAGTGTCTTCCACAGAGGAAAGTCAAGAAGAAAGACAAGGGCATATTGATCTCATACAAGATGTTACTTCACCAAAGCCTAAGGGGAGTGCTGTCATTGGTTCAGTGAAAGAGAGTCAAACATCTGATGGCAAGGAAGGGGAAAAGGCCATGGCCAGTGACAACAGCAGTGTGGATTCCCTGGCAGCTCGAGTTGCCTGTGTCCTTAAAAATGAATCCCCGGCGACAGTGGCCTCCAGTGTCATAAGTGAGGGGGACCAAGAGGAATGCAAAGCACAAGACTGGATTAAATTGAAGGTGGCTGGCCAGCATCATGAGCCCCTGGAACTGAATGTAGAAGATCGTCAGAGGATTGAGGAGATTAAAGCAGAACTCTTGCTTAACACTACTGGAAGAAAGGGCCAGTGGAGTACAGATACTGATTCAGATGCCACCTCCAGTTTAGGTCTGCCTGAGGTGCAGCCTTCAGGGAAACCAGCAGAAGAATTATTTGCTCTTCACACTGCAAAGCACCAGATCTCCAGTCAGATGCAGAAACTGACCAGCAATCCGTTTGACACCAGTGTGGAGCTCCACACTCCTCTGCGGAAAGATATGGACGCACGCATCCGAGAAAGAGAGGAGCATCCCAGACCTAGTGCCACTCAGCAGCTGGCATATGAAGTCAGGAAACCTATTGCCTCCATCACATTTTCCTCCCGCAAGCGTTCCCCTTCTCCCTCTGCATGCCCCACTGGGCTGCTCACCCCTGCTTCAGAGTTCTTTTGCCACACAGACCTCATCCAGCAGGAGAATCAACAGCCTCCATCTATGGGGCCTACAGAGCTAGACCAAAGACAAGCAGACAGCCTCCCTGCTATGACAATAACTCTCCCTGAGAGTCAAGAGCATGCTAATATACAAAAGGTAGTTTTTTCCCATCAGATCCCTGTTGCCGAGACTGCTCCTAGGGGTTATTCAGACTCCCATGTCCAGGACATATTCAGTGAAGCTGAGAGGGATGCTTTAACAAACAGACATTTTGTTccaacaataaaatcaatatctAAAAGCTATGAGCAGCTAAGAAGAAATAATTTAACTGGACAAGATGAATATGATTCTGTATCTGATTTAGGACCAATAAAGGACATTCTTGCCAGCAATTCTGCAACAGGGTATGGTTTCTGTCACCCTCAGCTAGGACCAGATGCACATGAAGAGCTGAAGCTTAAACTTAGTGCAGCATGCAGTAAACGGACAGAAAAAGAGCAACAAGGAATTTCTGTCACCACTGATGACACCCTCCCTGCTATTCTTCCAGATGTTAGAGACCATAGCCCTGGAAGGAATTTTCAAATGGATGCAGCTAAAAAGAGACAGGCTTCCAGATCTGCTTCTAACCTGACCCTAGAGGGCAATGCTTCAGCCAGTCTAGAGAACAGTGCTGCACTTCTGCAGATTTCATCTTTTGCCTCTGGCATACCTTCAGTTTCGTCTCCCACCAAAAAGGTATTATCATACGTCCATGTGACTTTATCGCCCAAAGACCCTGATGGGAAATCCAAGTCAATTGAAGAGAAAGAGTTTCAGTTTGATTCTTCTCTGCCAAGAAATGAGGACGGTGGTGCTGAGATGTACCAAGGGAGAACTGGCACTCTTCCTGCTTTTCCGAGGCTGGATCCTTCTGGGAACCCTTCAGAGGAGAAAGCACAGTTTCCATTTCAAGGACATTTGTCCCCAGATGCTGCGGTTTCAGAGGAAGCTAGTAATGTCAGAGAGCGAAGAGCAGCAGACATTTCAAAGCCTTTACTGGAGCAAGGGGGTTCTTGTGAAGATCCTCCTATGCTGTTGCCATATAAACCACATGGGAGCCCTGAGATATTTTACATGCCTAACACTGGGGGTCAGGTTTCCACTATTCTCTCAGACACCACCATGGAAAGCTCACATACAGGGTCAGATGATGCTGTCCCACCGAAATTCACTGTAGAGATCGTGGGCTCCAAAAACAAAGAAGTGGACATTGATGAGGGGATCTACATCAAGAGAACTCAACCTAGGACTGTATGGAAGGAAAACAAAGGAAGAGCTCAAAAAGAAGAGGCCCATCAGACTCACCCAAGACCCTCCCCTGAATACCCAGTCCCTATGGAGGGAAGGGATCATGGTCATCTTAACAGGGAATCAGCAGCTAAGAGCAGCTGTATATCCTTCAGTGGAACCACCTCAAAACACTCAGAACACCGGAGAGGAGAGCGAGAGTTCAGCAGGGAAAACCTagctttcagaaaaaaacaagaaagtgatgAGTTTGCCTCTCTGAAAGGTGAAGTTGAATACAGCATAGAGGATCTACATGTTCATTGCAGCTTGGTTGGAGAACATCCAACATCATCCACAGCAGCAAGGAGCATGACCACAAGGGAGAACTCTTCTTATGGATCCCCTGCTCAACTGGGTTATGAAAGAACCTTGGACCCTGGTTTCCAGGTGTCTACGAATGATTCCTTGCAAGGAAGTAGGACTTTGGATGAGCTATGGGAAAAGTTCAAAGAGAAACGGAGTTGTTCAGAACCCCAGAATTACAGTGGGAGTGCTCTTCCCCTTTTGGAGAGGCTTGATCGTCTTTCCAGGCTCCTGCACAACTCTAGTCATCATTCATTCACTCCTGGGAGACAAAATGAACAGAGTGGGTCCAGAGTCCATGGGTTGCAGAGCAGTAAAAATGATGAAGTGAAGGGCAGGCTAAGAGAAAACGGAGACAGACACTTCCGGGAAGCATTGCGAGAAATGTCTGCAGACCCAGAAGAGATGCTAACATCCATCCTGACTAAGCACAGTATCACTCTTTCTTCTTCAAGCCAAGAGCCTGGCAGAGGGATGGCTTCCTTTAGCCACCACCTTTACCCTGCAGAAAGAGAACAGGAGGATTCGGTACCAAGTGAGGCAGTGTCTGAGGTGGACACAGCCATTCAAAAGGATTCCACAGATAACAGTCACATCGAGACTGGCAGCACCATATCCACCATTGACACAGCTCGACTTGTCAGAGCCTTTGGGCATCGGAGAGTCACTGTCAAACCAGGCCTAAGAAAACTGTACCACACTATTGATAAGCAGAAGGGAAACTTGGAGATGAAGAGAACATCAAAGCAGAGAGAAAGCCAGAGGCAAAAATATAGATCGGCAGAAAGTCCGTTATTGTGTAGAACAGAGTCCACGAGGACCCTTGATTCTGTTTCGTCCACAAGTACCTATTCCCTCCCTGCACAGCAAGGCCAATCAAATACTCTCAAGAAGAAGGCAGTTAAATTGGTCAGTAAAGGGATACAGGCAGGGGATCTAGAGATTGTGAACAGTGGAACCAAGAGGCACACAAGGGATGTGGGGATGACCTTCCCCTCTCCAGGGTTTTCCCGGGGAGTGCAGACGGCAGCCTCCAGGATGGGAACAAAAAGAGATGAGCACAACGAATCAGCATTACAGTCATTCTTTAATGAGAACAAGACAAGGAAGAGCAATCTGCAACAACACCCTCGGGGTTTGAGTTGGTTTGTTCCTGTTGACGACCTAAAATCTAATGCAAAGAAAGAGAACCAGCCTGGCTCCAGGTCAGGTCCTGGCCCAGTCTGGTTTGAACCCTACACTAAAAACAAACCCTGGAGGGAGCCACTCCGAGAGAAGCACGTGCAGGAACAGCCAGTGAGCATCAGAGGGAGGAGCATGGtccagccaatcacagctcCTGAAACAAATGGCAAGCCGCCAACTTCCCTCATCCATAGAACTCTTCAGGAAGCTCTTCAGATGCGCCACCCAGAATTCGTTTCTCGTTCCAGAGAAAGATTGAAGAGATTAGAGCTGCTggcagaggagaggaggatgcaGGCTGTGTTTGACAGTGAGAGAGAAGACCTGTTTAATCGTCCGGGAACTAAGAAAACCTGGAGAGCCAGTCATCCTGACAGGCTGCATGGTGAAGaaAATCTtctacagaagaaaaaagacattCCAAAGAAAGAGATGTTCATGAGGTCCAAACTGAAGTACACTCAGCTGCCTGAAGTGCTGCTGCGccgagaggaggagaggaggaaggcGGAGTATCGCTCCTACAGACTCAAAGCAGAACTTTTCCAGAGGAAAGTCACCAGCCGTATTTTGGGTAGAAAAACATTGTGGCAGTGAATCAACAGACCATGAAAAGTGAAAACCATGAATTCCACAGAGTGCAGTAATTAATTGTATGAAAGCAGGATTCAG

Function

GO: NA

KEGG:

id description
K16741 ALMS1; alstrom syndrome protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017387 True 8409 mRNA 0.47 20 360455 470430

Neighbor

gene id symbol gene type direction distance location
AMCG00017391 NA coding upstream 465451 935881 ~ 936676 (-)
AMCG00017393 pcgf1,LOC107589114,LOC107710472,LOC107660820 coding upstream 804802 1275232 ~ 1289433 (-)
AMCG00017394 LOC106604596,LOC105028255,LOC106611619,LOC103363938,LOC104951404 coding upstream 968098 1438528 ~ 1447581 (-)
AMCG00017395 tlx2,LOC106611621,LOC106604594 coding upstream 1085098 1555528 ~ 1561186 (-)
AMCG00017396 NA coding upstream 1129158 1599588 ~ 1600290 (-)
G89803 NA non-coding downstream 188705 166138 ~ 171750 (-)
G89885 NA non-coding upstream 31737 502167 ~ 528797 (-)
G89892 NA non-coding upstream 162486 632916 ~ 633178 (-)
G89893 NA non-coding upstream 221140 691570 ~ 691851 (-)
G89895 NA non-coding upstream 250871 721301 ~ 721711 (-)
G89900 NA non-coding upstream 440966 911396 ~ 911648 (-)
AMCG00017384 LOC106911887,LOC104963986 other downstream 8669 160054 ~ 351786 (-)
G89804 NA other downstream 254570 105685 ~ 105885 (-)
AMCG00017418 NA other upstream 2131353 2601783 ~ 2615562 (-)
AMCG00017426 NA other upstream 2240872 2711302 ~ 2841894 (-)
G90400 NA other upstream 4072345 4542775 ~ 4544760 (-)
G90501 NA other upstream 4687954 5158384 ~ 5221021 (-)
G90502 NA other upstream 4752043 5222473 ~ 5223047 (-)

Expression


Co-expression Network