AMCG00017388 (LOC108267694,LOC106608525)


Basic Information

Item Value
gene id AMCG00017388
gene name LOC108267694,LOC106608525
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 207586 ~ 211936 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017388
ATGGCTCCCCTTGAGGGAATGTGCAGTAATGAGAACTCGGGAGGCATCAATGTGGACCACTCAGATTTGTCCATTGGGGCCGCAGCTACGATGGCCCACGAGATCGGGCACAACTTTGGCATGAGTCATGACAACGAGGGCTGCTGTGTGGAGGCCACACCAGAGCAGGGCGGCTGTGTAATGGCAGCTGCCACTGGGCACCCTTTCCCTCGTGTGTTCAGTGGCTGCAGTAAAAGTGACCTGGACAGCTACTTCAGGAAGGGAGGAGGAATGTGTCTCTTCAACATGCCTGATATGAAGGACCTGGTTGGGGGAAAGAGGTGTGGGAATGGCTTTGTAGAGGCCGGGGAGGAGTGTGACTGTGGGGATCCAGAGGTGAGATCAGTAGTGTTTCTCCTTGTATGA
>TU112033
gtacagaaaacaaaacagtgaccTCCCGAAAATAAAGGAGAGGATAATGGAAATTGCCAATTATGTTGATAAGTTTTACAGGGTCCTGAATATCCGGGTGCCACTAATAGGTCTGGAGGTATGGACTGAGAGGGACCAATGCTTGGTGACAGAGGAGCCAAATGCCACACTCTGGTCTTTCCTGCAATGGAGACAGAAGCTGAAATCACGCAAGAAACATGACAATGCACAGCTGCTCACGGGTGTCATTTTTAAGGGTACAACCATCGGCATGGCTCCCCTTGAGGGAATGTGCAGTAATGAGAACTCGGGAGGCATCAATGTGGACCACTCAGATTTGTCCATTGGGGCCGCAGCTACGATGGCCCACGAGATCGGGCACAACTTTGGCATGAGTCATGACAACGAGGGCTGCTGTGTGGAGGCCACACCAGAGCAGGGCGGCTGTGTAATGGCAGCTGCCACTGGGCACCCTTTCCCTCGTGTGTTCAGTGGCTGCAGTAAAAGTGACCTGGACAGCTACTTCAGGAAGGGAGGAGGAATGTGTCTCTTCAACATGCCTGATATGAAGGACCTGGTTGGGGGAAAGAGGTGTGGGAATGGCTTTGTAGAGGCCGGGGAGGAGTGTGACTGTGGGGATCCAGAGGAATGCACAAACTCCTGTTGTAACGCCAAAAACTGCACTTTGAAGGCTGAAGCCCAGTGTGCCCATGGAGTGTGCTGTGAGGACTGCAAGGTACAATTGC

Function

NR:

description
PREDICTED: disintegrin and metalloproteinase domain-containing protein 33-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017388 False 405 mRNA 0.55 3 209397 210954
TU112033 True 746 TUCP 0.52 6 207586 211936

Neighbor

gene id symbol gene type direction distance location
AMCG00017385 NA coding upstream 35839 109675 ~ 171747 (+)
AMCG00017389 NA coding downstream 209573 421509 ~ 440294 (+)
AMCG00017390 NA coding downstream 643342 855278 ~ 887994 (+)
AMCG00017392 lbx2,LOC105028271,LOC106604581,LOC106611617 coding downstream 1053506 1265442 ~ 1267334 (+)
AMCG00017399 NA coding downstream 1522496 1734432 ~ 1736022 (+)
AMCG00017398 NA coding downstream 1546450 1758386 ~ 1768848 (+)
G89819 NA non-coding upstream 27651 177246 ~ 179935 (+)
G89818 NA non-coding upstream 31083 175050 ~ 176503 (+)
G89784 NA non-coding upstream 164521 42802 ~ 43065 (+)
G89832 NA non-coding downstream 15315 227251 ~ 228724 (+)
G89837 NA non-coding downstream 130679 342615 ~ 402466 (+)
G89896 NA non-coding downstream 533818 745754 ~ 745999 (+)
G89898 NA non-coding downstream 665975 877911 ~ 878653 (+)
G89901 NA non-coding downstream 703067 915003 ~ 915213 (+)
AMCG00017386 dctn1,LOC101464740 other upstream 109189 48007 ~ 98397 (+)
AMCG00017422 leprotl1,LOC103152176 other downstream 2475484 2687420 ~ 2695453 (+)
AMCG00017445 NA other downstream 4380866 4592802 ~ 4606571 (+)
AMCG00017446 NA other downstream 4450689 4662625 ~ 4688223 (+)
AMCG00017486 NA other downstream 6517802 6729738 ~ 7188643 (+)
G90877 NA other downstream 7456247 7668183 ~ 7671850 (+)

Expression


Co-expression Network