AMCG00017393 (pcgf1,LOC107589114,LOC107710472,LOC107660820)


Basic Information

Item Value
gene id AMCG00017393
gene name pcgf1,LOC107589114,LOC107710472,LOC107660820
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 1275232 ~ 1289433 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017393
GaagaagtgaaagtgaaaatcaAAGACCTAAATGAGCACATTGTTTGTTACCTTTGTGCTGGGTACTTCATTGATGCTACAACAATCACCGAATGTTTACATACATTCTGTAAGAGCTGTATTGTGAAGTATCTTCAGACCAGCAAATACTGTCCAATGTGTAACATAAAAATCCATGAAACGCAGCCATTACTAAATTTGAAGTTGGACAGGGTGATGCAAGATATTGTCTACAAGCTGGTACCAGGATTACAAGAGAGTGAAGATAAAAGGATTAGAGAATTCTATCAGTCACGTGGTTTAGAACGTGTTATTCAGCCATCGCATGAAGACTCTGTACCAGATCCAGCAGGATTGCCATACACCAGTTTCGATCACTCAAAAGCCCATTTCTACCGATATGATGAGCAAGTCTCACTTTGTTTAGAAAGACAAAGttcATCAACTGGCAAGGATAAAAACAAGTTCACACTACAGcAAAAGTTTGTCAGGTGTTCTGCAAGAGCAGAGGTGCGGCATCTGAGAAGGGTCCTTTGTCATAGACTTAGTGTTGACAAACATCAGGTTCAGATGTTATTCAACAACGAGTCCTTGCCGGATCACATGACCATGAAGCAACTATGGCTGTCACATTGGTTTGGCAAGTCGCAACCTTTGGTCCTTCATTACACCATCAAAGACAAGCGAGGAAGATAGAACGAGTGCACATTTTGAAAGGATATTCTTGGTTGAACATTTCAATGAATTTCACAGCCTATAAATATCAGGTGTacatactttgtattttatatattctatttttaatgatatttctgtaaatatagatattttgggttttgttttatttttctaaatacattttgtgaatagATAAGAGCTGTTGTCttattaaatctattttgtaatccaaaatatttatatggtatgtttttttttttgtttgtttgttagttttaaaagcaaaataaaatggttcCTTACAAAATGTGATATGTAAACAGTGAGAGGTGGCTATGCATCTGActcattttgtgtaatttgtgcCTGTAATGTCATACCCAAGCAAGACAACTTCAAATGGCTCCAAGTGGGGAAGGTGTGAGAActgattcttcttcttttgcttAAAATGAAGGTTCACCTGTATAAACTGAGATTAATACTTGCCTTCAGCAATTTacccttttttcttatttgtattgttatgaaAGGAAAGTGTATATGATAA

Function

symbol description
pcgf1 Predicted to enable promoter-specific chromatin binding activity. Acts upstream of or within aging and developmental growth. Predicted to be located in nucleus. Predicted to be part of PRC1 complex. Is expressed in oocyte stage I; oocyte stage II; oocyte stage III; and oocyte stage IV. Orthologous to human PCGF1 (polycomb group ring finger 1).

NR:

description
polycomb group RING finger protein 1

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11487 PCGF1, NSPC1; polycomb group RING finger protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017393 True 1228 mRNA 0.36 8 1275232 1289433

Neighbor

gene id symbol gene type direction distance location
AMCG00017391 NA coding downstream 338556 935881 ~ 936676 (-)
AMCG00017387 NA coding downstream 804802 360455 ~ 470430 (-)
AMCG00017394 LOC106604596,LOC105028255,LOC106611619,LOC103363938,LOC104951404 coding upstream 149095 1438528 ~ 1447581 (-)
AMCG00017395 tlx2,LOC106611621,LOC106604594 coding upstream 266095 1555528 ~ 1561186 (-)
AMCG00017396 NA coding upstream 310155 1599588 ~ 1600290 (-)
AMCG00017397 NA coding upstream 311158 1600591 ~ 1601058 (-)
AMCG00017400 NA coding upstream 415513 1704946 ~ 1707277 (-)
G89912 NA non-coding downstream 235761 1039272 ~ 1039471 (-)
G89909 nanos1,nano1,LOC105894108,LOC106611616 non-coding downstream 303804 968543 ~ 971428 (-)
G89900 NA non-coding downstream 363584 911396 ~ 911648 (-)
G89895 NA non-coding downstream 553521 721301 ~ 721711 (-)
G89893 NA non-coding downstream 583381 691570 ~ 691851 (-)
G89939 NA non-coding upstream 51439 1340872 ~ 1341089 (-)
G89940 NA non-coding upstream 69251 1358684 ~ 1358981 (-)
G90017 NA non-coding upstream 538247 1827680 ~ 1831528 (-)
G90066 LOC107678491 non-coding upstream 635775 1925208 ~ 1926851 (-)
G90093 NA non-coding upstream 765406 2054839 ~ 2055363 (-)
AMCG00017384 LOC106911887,LOC104963986 other downstream 923446 160054 ~ 351786 (-)
G89804 NA other downstream 1169347 105685 ~ 105885 (-)
AMCG00017418 NA other upstream 1312350 2601783 ~ 2615562 (-)
AMCG00017426 NA other upstream 1421869 2711302 ~ 2841894 (-)
G90400 NA other upstream 3253342 4542775 ~ 4544760 (-)
G90501 NA other upstream 3868951 5158384 ~ 5221021 (-)
G90502 NA other upstream 3933040 5222473 ~ 5223047 (-)

Expression


Co-expression Network