AMCG00017406


Basic Information

Item Value
gene id AMCG00017406
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 2023432 ~ 2032216 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017406
atgacatatgCAAGTGATCAACTGTATAAAGGTTACCTGCGGCGCAATATGGCACATTTTGTGACCATAGTCAAAGTGATGGATATCTTGCCACATCTTCACTGCCTCACAGATTCGGACAGGGATGAAATTGTGGCTAAAAGAGAAAGCACAGGCAATTATAATGCCATGCAGTTGCTACTGGATTGCCTCAGGCGAAGAGAAGACTGGCCATCGATTTTCATTAGAGCTCTTGAAGAGACTGAACAGAGAAATCTTGCATCAGAGCTCAGGAGAGAATATGAGTCTCTTCTAGTCCAGCACACTGCCCTCCCTGCTGAAGCTGCTTCCCATGAGAATACTCCCCCTAAAGACATAGCTGCTGCATCTGTCCCCCCACCAAATCTGGCACCAGCCCCTCAACCAGACCGACCTTCTGCCCCCTCTCAGTCTCTCCCACCTCAGCCACATAGTTCTGGGGCTGAGGCCCACACATCCCTCCCAGCAAACCTCTCCCAGGCACTTACACAGCACTCGCTGCTGGATCAGTCGGAAGCGAAGTCCCCTGTTCAGGAAACTGACTCTCCTGACGGCAAAGTGGTGAGCACTCCTGTGAAGCCAGCTGAAGTCAGTCAGgctGGGATAAACAAGCAGCATACAAGCCCACCTCAGGAGAGCCCAACTCAGCAGACATCCAGAACCAGTAGAGGCACAGCTGCCCTAGATCACCACAATGCCTTTCCTATCCCATCAAGCAGTGGGGGCCACTCCAATGCTAAAGATGAGTTTCCCAGTAAGCCTGGAATGCTTTATTCATTTGTTGATGTACACGTCCATCAGGCTGCAAATAGCCGAGTGGACATTTCTACAGTCCGTGAAGAGCATCCCTATTCTGGTGATTCCAATCGTCTGCAGTTTAGTGGTTGCTCTTCTGATAGCATTCAGGCTCCTGCAGGCCCAGAGGTTGCATCTGTTCCAGAGCATTCTAGAAATGAGCCTGAGGAAAACCACTATGCTTCCTACAACTCCTCTGTTCCCTGTCCTTGTCAGAGTGTCCTAAGCAATAATTCCTTCATTCCCGAAAGGAAGCCAACAGAAGATATGGCTAACAGAATGTCCCAGGATAGTGGACCAACTGTCAACAATGATGCtgaggactctctctctctctcagatgtgAGAGAGTCTGCAATGCATTTCTACCAACCTCCCCCAGTTGATAACTATGCTGTGCAAACCTCTAGCACCATAAACAAGAGGTCTCCTGAGACACCTAGAGAACACTCCAGTTCTCAAGACCTAGGGATAGAAAACTCTTCTTCTAGGCCACACAATGAGAGCCCCTGGATAGCTGGTGCCATTAATAATGTTGATAATAACTACAGTCAAGTGATCGTGTCGGCTGCCGTGTTTGTTTGTGCGGTGCTGCTGTGGAGATACATGAAAATGTAG

Function

GO: NA

KEGG:

id description
K12648 MAVS, IPS1; mitochondrial antiviral-signaling protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017406 True 1431 mRNA 0.49 4 2023432 2032216

Neighbor

gene id symbol gene type direction distance location
AMCG00017408 pank2,LOC107391889,LOC107103406,LOC101161204 coding downstream 7870 2005759 ~ 2015562 (-)
AMCG00017407 loxl3,LOC108441751 coding downstream 29891 1985621 ~ 1993541 (-)
AMCG00017410 NA coding downstream 58868 1948160 ~ 1964564 (-)
AMCG00017409 loxl3,LOC106612874 coding downstream 76507 1937122 ~ 1946925 (-)
AMCG00017401 NA coding downstream 242224 1771413 ~ 1781208 (-)
AMCG00017414 NA coding upstream 43962 2076178 ~ 2427127 (-)
AMCG00017417 letm1 coding upstream 496699 2528915 ~ 2566277 (-)
AMCG00017425 NA coding upstream 809706 2841922 ~ 3087650 (-)
AMCG00017430 ctnna2 coding upstream 1397405 3429621 ~ 3487525 (-)
AMCG00017431 ctnna2,LOC102793143,LOC107706127,LOC103137875 coding upstream 1497467 3529683 ~ 3539396 (-)
G90066 LOC107678491 non-coding downstream 96581 1925208 ~ 1926851 (-)
G90017 NA non-coding downstream 191904 1827680 ~ 1831528 (-)
G89940 NA non-coding downstream 664451 1358684 ~ 1358981 (-)
G89939 NA non-coding downstream 682343 1340872 ~ 1341089 (-)
G89912 NA non-coding downstream 983961 1039272 ~ 1039471 (-)
G90093 NA non-coding upstream 22623 2054839 ~ 2055363 (-)
G90098 NA non-coding upstream 46824 2079040 ~ 2079244 (-)
G90129 NA non-coding upstream 153169 2185385 ~ 2185739 (-)
G90139 NA non-coding upstream 253009 2285225 ~ 2285529 (-)
G90157 NA non-coding upstream 340894 2373110 ~ 2464259 (-)
AMCG00017384 LOC106911887,LOC104963986 other downstream 1671646 160054 ~ 351786 (-)
G89804 NA other downstream 1917547 105685 ~ 105885 (-)
AMCG00017418 NA other upstream 569567 2601783 ~ 2615562 (-)
AMCG00017426 NA other upstream 679086 2711302 ~ 2841894 (-)
G90400 NA other upstream 2510559 4542775 ~ 4544760 (-)
G90501 NA other upstream 3126168 5158384 ~ 5221021 (-)
G90502 NA other upstream 3190257 5222473 ~ 5223047 (-)

Expression


Co-expression Network