AMCG00017407 (loxl3,LOC108441751)


Basic Information

Item Value
gene id AMCG00017407
gene name loxl3,LOC108441751
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 1985621 ~ 1993541 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017407
ATGAAGACAGAGGTGCTGTGCTGGAGCTGCGGGGTCCTGGCTGCTCTCCTATGCCTCTGGGTGCCGGCCTGTGTCTCCCAGCAAACCACTCCCTCACCGCAGCAGAAGAGCAAGCTAAAGTTCCGCCTGGCCGGGTACCCCCGCAAGCACAATGAAGGTCGCATTGAGGTCTTCTACAATGAAGAGTGGGGGACCATCTGTGATGACGACTTCTCCCTGGAGAACGCCCTTGTACTCTGCAAGCAGCTGGGCTTCATCTCAGCCACCGGCTGGTCACACAGCGCCAAGTACGGCAAGGGAGCAGGGAGGATCTGGCTGGACAATGTTCAGTGCAGTGGCAGTGAGAAGAGCATTGGGGACTGCAAGTCTCGGGGCTGGGGGAACAGTGACTGCACCCACGATGAGGATGCCGGAGTTGTCTGCAAAGACGAGAGGCTTCCAGGATTTGTGGAGTCCAACGTCATTGATCAAGTGGAAGAGAACCGAGTGGAGGAGGTGAGGTTGAGACCAGTGGTGGCCACTGCCAAGAAGAGAATGCCCATCACAGAGGGCATCGTGGAGGTAAAGTACAAAGACGGCTGGGCCCAGATCTGTGACGTTGACTGGAACTCCAAGAACTCCCGGGTCATCTGTGGAATGATGGGATTCCCCAATGAGAGAAAGGCCAACCGCAACTTCTACAAGTAA

Function

symbol description
loxl3 Enables protein-lysine 6-oxidase activity. Involved in epithelial to mesenchymal transition; negative regulation of transcription, DNA-templated; and peptidyl-lysine oxidation. Located in cytoplasm; extracellular region; and nucleus.

NR:

description
PREDICTED: lysyl oxidase homolog 3 isoform X2

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0016020 membrane cellular_component
GO:0005507 copper ion binding molecular_function
GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor molecular_function
GO:0005044 scavenger receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017407 True 687 mRNA 0.56 3 1985621 1993541

Neighbor

gene id symbol gene type direction distance location
AMCG00017410 NA coding downstream 21057 1948160 ~ 1964564 (-)
AMCG00017409 loxl3,LOC106612874 coding downstream 38696 1937122 ~ 1946925 (-)
AMCG00017401 NA coding downstream 204413 1771413 ~ 1781208 (-)
AMCG00017400 NA coding downstream 278344 1704946 ~ 1707277 (-)
AMCG00017397 NA coding downstream 384563 1600591 ~ 1601058 (-)
AMCG00017408 pank2,LOC107391889,LOC107103406,LOC101161204 coding upstream 12218 2005759 ~ 2015562 (-)
AMCG00017406 NA coding upstream 29891 2023432 ~ 2032216 (-)
AMCG00017414 NA coding upstream 82637 2076178 ~ 2427127 (-)
AMCG00017417 letm1 coding upstream 535374 2528915 ~ 2566277 (-)
AMCG00017425 NA coding upstream 848381 2841922 ~ 3087650 (-)
G90066 LOC107678491 non-coding downstream 58770 1925208 ~ 1926851 (-)
G90017 NA non-coding downstream 154093 1827680 ~ 1831528 (-)
G89940 NA non-coding downstream 626640 1358684 ~ 1358981 (-)
G89939 NA non-coding downstream 644532 1340872 ~ 1341089 (-)
G89912 NA non-coding downstream 946150 1039272 ~ 1039471 (-)
G90093 NA non-coding upstream 61298 2054839 ~ 2055363 (-)
G90098 NA non-coding upstream 85499 2079040 ~ 2079244 (-)
G90129 NA non-coding upstream 191844 2185385 ~ 2185739 (-)
G90139 NA non-coding upstream 291684 2285225 ~ 2285529 (-)
G90157 NA non-coding upstream 379569 2373110 ~ 2464259 (-)
AMCG00017384 LOC106911887,LOC104963986 other downstream 1633835 160054 ~ 351786 (-)
G89804 NA other downstream 1879736 105685 ~ 105885 (-)
AMCG00017418 NA other upstream 608242 2601783 ~ 2615562 (-)
AMCG00017426 NA other upstream 717761 2711302 ~ 2841894 (-)
G90400 NA other upstream 2549234 4542775 ~ 4544760 (-)
G90501 NA other upstream 3164843 5158384 ~ 5221021 (-)
G90502 NA other upstream 3228932 5222473 ~ 5223047 (-)

Expression


Co-expression Network