AMCG00017413 (fgfr3)


Basic Information

Item Value
gene id AMCG00017413
gene name fgfr3
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 2427893 ~ 2460519 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017413
ATGGACAGTATTGTCATCTTAGCCCATTCAGaTTCCTTGTCATCCGGTGACGACGAAGACTATGATGAGGAGGCTGATGATGCAGAAGCCCCATACTGGACCCGCCCGGACCGAATGGAAAAGAAGCTGCTTGCCGTTCCAGCTGCGAATACAGTGAAATTCCGCTGTGCGGCTGCTGGGAACCCCATGCCCACCATCCACTGGTTGAAGAATGGCAAAGAGTTCAAGGGAGAGCAGAGGATGGGTGGCATCAAGCTGAGACACCAGCAGTGGAGCCTGGTGATGGAGAGTGCGGTGCCTTCTGACCGGGGGAACTACACCTGTGTAGTGCAGAACAAATATGGCACTATTGTCCACACATACCAGCTTGATGTCCTCGAGCGGTCACCCCACAGGCCTATCCTGCAGGCTGGCTTACCGGCTAACCAGACGGTGGTGGTTGGCAGCGATGTGGAGTTCCATTGCAAAGTGTACAGCGACGCTCAGCCTCACATTCAGTGGCTCAAACACATAGAGGTCAATGGCAGCAGATACGCTAACGACGGTGTGCCTTACGTCAACATCCTCAAGACGGCAGGTATTAACACAACGGATAAGGAACTAGAGATTCTGTTCTTGccaaatgtttcttttgaagATGCAGGGGAGTATACTTGCCTGGCTGGGAATTCTATTGGGTATGCTTACCACTCTGCATGGCTGACAGTCCTACCAGCTATAGAAGAGATTGAAAAGGATGATGACTACGCCGACATCCTCATTTACGTGACAGGCTGTGTGCTTTTCATCCTCACCGTGGTCATCATCATCCTGTGTCGAATGCGGATGACCACTAAGAACACTCTAACCACTCCTCCTGTTCAAAAGCTCTCCAAATTCCCACTCAAAAGACAGGTGTCCTTGGAGTCCAATTCGTCCATGAATTCGAATACTCCACTGGTGAGAATCGCACGTCTGTCATCAAGCGATGGACCAGTGCTGGCCAATGTGTCTGAGCTGGAGCTCCCTGCTGATCCAAAGTGGGAATTCCCTCGAACAAGGCTGACGCTGGGGAAACCCCTGGGAGAAGGCTGCTTTGGCCAAGTGGTCATGGCAGAGGCAATTGGAATAGACAAGGAAAAACCAAATAAGCCGCTAACTGTCGCTGTCAAGATGTTGAAAGATGACGCCACAGACAAAGACCTCTCAGATCTGGTGTCAGAGATGGAAATGATGAAAATGATTGGAAAGCACAAAAACATCATTAACCTTCTAGGAGCCTGCACTCAAGATGGTCCACTATATGTCTTGGTGGAATATGCATCAAAAGGCAATTTAAGGGAGTATCTCAGGGCGCGGCGCCCTCCTGGCATGGACTATTCCTTTGACACCTGCAAGATCCCAGACGAGCAGCTGACCTTCAAAGACTTGGTGTCTTGCGCCTATCAAGTGGCAAGAGGAATGGAGTACCTCGCATCCCAAAAGTGTATTCATCGAGACTTGGCAGCCAGGAATGTGTTGGTTACTGATGACAATGTGATGAAAATAGCAGATTTCGGTCTGGCAAGGGACGTACATAATATCGACtactacaaaaaaacaacaaatGGTCGGCTGCCTGTGAAATGGATGGCTCCGGAGGCATTGTTTGACCGGGTCTACACGCACCAGAGCGATGTATGGTCCTATGGTGTCTTGTTGTGGGAGATCTTCACTCTGGGCGGGTCACCCTACCCAGGGATCCCAGTGGAGGAGTTATTCAAGCTGCTGAAGGAAGGCCACCGCATGGACAAGCCTGCAAACTGCACACATGAGCTGTACATGATTATGAGAGAGTGCTGGCATGCCGTTCCGTCGCAGAGGCCGACCTTCCGACAGCTCGTAGAGGACCACGACAGGGTGCTGTCTATGACCTCCACTGACGAGTACCTGGATCTGTCGGTGCCGTTTGAACAGTACTCCCCCACGTGTCAGGACTCCAACAGTACTTGCTCCTCGGGGGATGACTCTGTGTTTGCTCATGACCCCTTGCCCGACGAGCCTTGCCTTCTCAAACAGCATCAGGGTAACGGTGTCATCAGGACATGA

Function

symbol description
fgfr3 Predicted to enable fibroblast growth factor binding activity and fibroblast growth factor-activated receptor activity. Acts upstream of or within regulation of hematopoietic stem cell differentiation. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be integral component of plasma membrane. Is expressed in several structures, including cranium; gut; nervous system; neural rod; and neural tube. Human ortholog(s) of this gene implicated in several diseases, including Crouzon syndrome-acanthosis nigricans syndrome; LADD syndrome; SADDAN; bone development disease (multiple); and carcinoma (multiple). Orthologous to human FGFR3 (fibroblast growth factor receptor 3).

NR:

description
PREDICTED: fibroblast growth factor receptor 3 isoform X3

GO:

id name namespace
GO:0018108 peptidyl-tyrosine phosphorylation biological_process
GO:0001501 skeletal system development biological_process
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0008284 positive regulation of cell population proliferation biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0005007 fibroblast growth factor-activated receptor activity molecular_function

KEGG:

id description
K05094 FGFR3, CD333; fibroblast growth factor receptor 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017413 True 2067 mRNA 0.51 16 2427893 2460519

Neighbor

gene id symbol gene type direction distance location
AMCG00017412 NA coding upstream 298381 2107891 ~ 2129512 (+)
AMCG00017405 NA coding upstream 378487 2047677 ~ 2049406 (+)
AMCG00017404 htra2,LOC106589831,LOC101079124,LOC105899646,LOC108441752 coding upstream 494442 1923477 ~ 1933451 (+)
AMCG00017411 htra2,LOC106589831,LOC101079124,LOC104960364 coding upstream 498439 1923477 ~ 1929454 (+)
AMCG00017403 NA coding upstream 533431 1876676 ~ 1894462 (+)
AMCG00017415 LOC103458261,LOC105909588 coding downstream 112970 2573489 ~ 2598970 (+)
AMCG00017416 NA coding downstream 185755 2646274 ~ 2649483 (+)
AMCG00017419 NA coding downstream 202167 2662686 ~ 2664553 (+)
AMCG00017424 NA coding downstream 214432 2674951 ~ 2683508 (+)
AMCG00017421 NA coding downstream 235590 2696109 ~ 2708643 (+)
G90070 NA non-coding upstream 423287 2003038 ~ 2004606 (+)
G90042 NA non-coding upstream 493109 1929142 ~ 1934784 (+)
G89983 NA non-coding upstream 838088 1580983 ~ 1589805 (+)
G89938 NA non-coding upstream 1086598 1340901 ~ 1341295 (+)
G89913 NA non-coding upstream 1315734 1111954 ~ 1112159 (+)
G90144 NA non-coding downstream 1363 2461882 ~ 2504164 (+)
G90149 NA non-coding downstream 31388 2491907 ~ 2528801 (+)
G90248 NA non-coding downstream 776926 3237445 ~ 3237726 (+)
G90284 NA non-coding downstream 1437299 3897818 ~ 3898125 (+)
G90333 NA non-coding downstream 1851739 4312258 ~ 4312475 (+)
AMCG00017388 LOC108267694,LOC106608525 other upstream 2215957 207586 ~ 211936 (+)
AMCG00017386 dctn1,LOC101464740 other upstream 2329496 48007 ~ 98397 (+)
AMCG00017422 leprotl1,LOC103152176 other downstream 226901 2687420 ~ 2695453 (+)
AMCG00017445 NA other downstream 2132283 4592802 ~ 4606571 (+)
AMCG00017446 NA other downstream 2202106 4662625 ~ 4688223 (+)
AMCG00017486 NA other downstream 4269219 6729738 ~ 7188643 (+)
G90877 NA other downstream 5207664 7668183 ~ 7671850 (+)

Expression


Co-expression Network