AMCG00017418


Basic Information

Item Value
gene id AMCG00017418
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 2601783 ~ 2615562 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017418
AGACAAACGACTTGTgcaatttttctttcattacttACACCATCTGAGCAGCTGAAGGAATGAGACTCAATGTTGGATTGTTAACGTTGTCTTCTGTGCTGTTAAATATCGCTAGCGAAATGGTCTACTATCGGAGCTCATCGTTTTcaattctgactgcttgcttgTTTGGAGTGGTTGTTAGCCAAACCACACTGGGGCCCTCTGTGACAAACACCACAGGAAGTGAGAACTCCACAGTGACAACTGGCCTCCCCCTCAGCACTGTGACTCCTGGCTGCTTCTCCCTCAACACCTCCACCTGTGCTGCCTGTGCCCCTGGCACCTACTACGACAATGGTACCCTGGCATGCTCGTGCTGCCCAGAGCATGGTCTGTGTGTGGCCCAGACAGACTGCCAGCCGTGCGCCAGGGGGCACTACCAGCCTCTGGCAGCCCAGGAGTTGTGCTTGCCTTGCTCTCAGGGTTTCTACACAAATTCCACGGGGAGCCCTGTGTGCCAGCCGTGCCCAGCAGGCACCTTCTCCAACTCCACTGGTTCTGAGGTCTGCCAAGGGTGCTCTTTAGGCTATTACACATCTAAACAGAATGCAACTTCCTGTGAGCCATGTCCACAGGGGACCTTCTGCAAGATCTGCAATATTGGCTTCTACCAGATCCGCTGGGGCCAGGAGAGCTGTGACATCTGCCCTAAGGATCACTACTGTCCCAGCCCAGACGTGAACCCTATCCTCTGCCCCGGCGATGCCTTCTGTCCCGCGGGCAGCACGGCTCCAGGGTACTGCATGGAGACCTTCCTGCGGAAAGCGGGCAACTCCTGTGAGCTGGCGCCTGTCACTATTGTCCTGCTGGTCCTCGCTGGGGGCATGGCACTCCTGTTCATCATCCTGCTGGTGCTGCGCCGGCGGAGGGAGACGGACCAGGAGCTGGCGGTGTCGAGGGCTCCTTTACTGCGCAAGGAGCGTCCACCGGGCCGTGTGTATGGGGTGGCATGGGATGCCGAGCCTGTGTATGCAGGTTGGTAACTCTGCCAGGCCCCACAGAATCTCCCGATACAGGCAGCAACTTTAACGCCaacatggaaaaaacaacagcagcagtaattaaaaaaaattaaaaaaaaggccAGCATGAACTGAAAGCCAATCAACTGACACAAGACTGAAGCACACATGAGGAGGAGTGTTTTTAcgcatttaatatattttttaattcgtTTTTGCTCTGGGAGGTTGCAGAAGAGTGCTTGGCTTTAATCACAGGATTCAGTCTGGCAGCCATCACAATGCAAGCagtgttaaaaacaattgtgctttgttgctttttttttttctgggatcAGCAGAAATCAGGAGTGTGGTGGCAGACTCTTCAGTTGTGGCCCTGATTAATGAATGTTGGACTTTTCCTGTGGCGTGTTTCCATTCCACGCAGACCATGCACCATGGCCGTTCTTATTTTCGGGAATGATAGGAAGATTGTTTTCTAAATTCTCTTCAACCAACCCGATACAGATGCTGTACTGAAATGGGCAGAGTGAATCAAAAGTGTAACAAAGCACTATGTACCAAATGGACCAGACCTGTATGCCAAACCACATGTAGGACCTGAGTGTACTGTGGGGGGAAACTAGACGTCCTTTTAGGGGAATACCCATTTTCATCTGGTAGAACTTTGTGGTTGTACTCCAGCAACAGTACAACAAAGACGCATTAATTTCACATGGatgctaaataaatgtgtaattccCCACTATACCACTGTACTGGAGATCATAACAAGAACTGctagggttttttttttccctaatttgttttaaagtgtggCCATTTTGCACTGCAGTCCTACGCAAGTCTTAATATTGTCTGTTTTCTGACAAATCAGCTGAGAAAATCTGTCTGAAGCCAGTTTAATAGAAACGTTACGTTTTGTAGAAGAATTCGATTCACAGCAGTTGGCCTTAATGAATGCTCTTCCTGAATTAGTTTACATGTGGTTCAAAGTGAACGtgtattgtacatttgtatgtgtatatttattatagaCAGTCCGTCATTATATTAATGCCATAGAAATTGTTTAGAGAGACAAACTACATCGTTTTTGAAATCCTTACTTATCCATTGTAACTTAATCAAACTACTGATGCCTATTTCAAGCAtaatatattttccttaatCTTTGAAATGTGCATGTTCACTCGTGTAAAAGTGTGATTATTTATCAGCTCTCTTCCTTCCACCACAGAAGTTTAAACTGGTTGTTTGCAGGCTAGTACTAAACTTTCCCTTTAATTTgcagtgcatttggaagaaagtGCATCCAGGTAACAAAGGTTAGTTTCTTGCTTGCAGTGGTACTGGAGACCAGAGCCATGCTGTTCCCATTTACTTGTGCTGAAGTTCATGTACTGCAAGTCTCCACTCGACTCTAAAACTGGTCGGAGTTGAGCTCCCCATTGGCTTCTcaattataagaacataagaaagtttacaaacgagaggaggccattcgacccatcacgTTTGTTTGGGGTCCATAACTTAGTAATCCAAATatcacatccagtctatttttgtctattttgtttccaaattgtcaggttcaaccacatcactggggagttttttccagattgtaacTACTATATACAGTGATATGATCATATTTtagtgtatacatttttaatgtacatatttttattggctagtatatacagctctggaaaaaattgagaccactgcaaaattatcagtttctctgtttttactttttataggtatgtgtttgggtaaaattaacatttgttttattctataaaatactgacaacatttatcccaaattccaaataaaaatatgaatggaaattaatggctgccatacatgtagagatgctgatttaagacaaaattgcagtggtctcttaattttttccagagctgtacattcTGCCATCTTTTATCATCCTGTGGTGGAAGGAGAAAAAATCTACAGGGAGACTATGAAACCTCTGGCTACACAACATACAGAGAAAAGCATACAGGTACAAATGTCAGGTTGTGGCCGGAGTAGCACTCTGAATTGTTGGCTAATAATGACCTACAAGAAACTTGACAATGTGTTGGTTAGCTTTGAatttctggatttatttgttgtgaTTTGGTACTGAAAGCAAAATATGAAACCTGTGTTCCTAAGAAACAGATCATCAGTCATGATCCCTAGCCATTGATAAATCCAGGGTTGGCTATTACATGCTCTGGCCCCATGCCCAGTGTTCTTTGAGCTGGCTTATGCTGGATGTTAGGAGTTGGTGTGTGGGTTCAAGCAGTTTGGACCATCTTTTAATCAACTAATTGTTCTAAACAGTAATTTGTGTATGCTTTTATTTGGGAATAGAAAGCTTGAATCTACTTCAGTAGAGACGGTGACcacactaaaacaaatgcagcttaCATGAACACTGCTTCTGAGCAGAAAGGTTTCCCAGGATGTAGTGTATGAACATGTCTGTctacaaatataacaattttcTCTGTCCAAgattaatgtgtatgtatttgaagacaaacatgtacaaattgtaaaaaaatttTTTGAAATAAAGGTcttcaaataaatgttcaaaattTTTT
>TU112472
ACCATCTGAGCAGCTGAAGGAATGAGACTCAATGTTGGATTGTTAACGTTGTCTTCTGTGCTGTTAAATATCGCTAGCGAAATGGTCTACTATCGGAGCTCATCGTTTTcaattctgactgcttgcttgTTTGGAGTGGTTGTTAGCCAAACCACACTGGGGCCCTCTGTGACAAACACCACAGGAAGTGAGAACTCCACAGTGACAACTGGCCTCCCCCTCAGCACTGTGACTCCTGGCTGCTTCTCCCTCAACACCTCCACCTGTGCTGCCTGTGCCCCTGGCACCTACTACGACAATGGTACCCTGGCATGCTCGTGCTGCCCAGAGCATGGTCTGTGTGTGGCCCAGACAGACTGCCAGCCGTGCGCCAGGGGGCACTACCAGCCTCTGGCAGCCCAGGAGTTGTGCTTGCCTTGCTCTCAGGGTTTCTACACAAATTCCACGGGGAGCCCTGTGTGCCAGCCGTGCCCAGCAGGCACCTTCTCCAACTCCACTGGTTCTGAGGTCTGCCAAGGGTGCTCTTTAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017418 True 3637 mRNA 0.43 8 2601783 2615562
TU112472 False 530 TUCP 0.56 4 2608689 2615524

Neighbor

gene id symbol gene type direction distance location
AMCG00017417 letm1 coding downstream 35506 2528915 ~ 2566277 (-)
AMCG00017414 NA coding downstream 174656 2076178 ~ 2427127 (-)
AMCG00017406 NA coding downstream 569567 2023432 ~ 2032216 (-)
AMCG00017408 pank2,LOC107391889,LOC107103406,LOC101161204 coding downstream 586221 2005759 ~ 2015562 (-)
AMCG00017407 loxl3,LOC108441751 coding downstream 608242 1985621 ~ 1993541 (-)
AMCG00017425 NA coding upstream 226360 2841922 ~ 3087650 (-)
AMCG00017430 ctnna2 coding upstream 814059 3429621 ~ 3487525 (-)
AMCG00017431 ctnna2,LOC102793143,LOC107706127,LOC103137875 coding upstream 914121 3529683 ~ 3539396 (-)
AMCG00017434 ctnna2,ctnna1,LOC107594905,LOC107750356 coding upstream 1122251 3737813 ~ 3747843 (-)
AMCG00017432 ctnna2,LOC107552348,LOC103137937,LOC107706127 coding upstream 1160932 3776494 ~ 3799472 (-)
G90157 NA non-coding downstream 137524 2373110 ~ 2464259 (-)
G90139 NA non-coding downstream 316254 2285225 ~ 2285529 (-)
G90129 NA non-coding downstream 416044 2185385 ~ 2185739 (-)
G90098 NA non-coding downstream 522539 2079040 ~ 2079244 (-)
G90093 NA non-coding downstream 546420 2054839 ~ 2055363 (-)
G90221 suclg1,LOC107746879 non-coding upstream 105864 2721426 ~ 2722298 (-)
G90226 NA non-coding upstream 220957 2836519 ~ 2836798 (-)
G90243 NA non-coding upstream 323688 2939250 ~ 2939477 (-)
G90244 NA non-coding upstream 324373 2939935 ~ 2940143 (-)
G90252 NA non-coding upstream 739503 3355065 ~ 3355489 (-)
AMCG00017384 LOC106911887,LOC104963986 other downstream 2249997 160054 ~ 351786 (-)
G89804 NA other downstream 2495898 105685 ~ 105885 (-)
AMCG00017426 NA other upstream 95740 2711302 ~ 2841894 (-)
G90400 NA other upstream 1927213 4542775 ~ 4544760 (-)
G90501 NA other upstream 2542822 5158384 ~ 5221021 (-)
G90502 NA other upstream 2606911 5222473 ~ 5223047 (-)
G90715 fat4,LOC106611628,LOC106604622 other upstream 3771690 6387252 ~ 6389038 (-)

Expression


Co-expression Network